Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03313 atgcgtGGCGTTTTACAACCGTTGGATTTAGCGATTCAAATTCCCTACCACTTCAGATGCCCAATCTCTCTTGAGCTTATGCGAGACCCAGTTACGGTCTCCACCGGTCAAACCTACGACCGAAACAGCATCGAGTCGTGGGTTAACACCGGCAACACCACGTGTCCTGTCACGCGAGTTAATCTCACAGACTTTACCTTCATACCAAATCACACCCTCCGCCGCTTAATTCAAGAGTGGTGTGTCGCCAACCGTGCTTTTGGCGTTCAGCGGATTCCAACTCCCAAACAACCCGCAGACCCTTCTCTTGTTCGTTCTTTACTTAACCAAATTTCTTCCCATTCTACCCCTGCTCAAATAAAACTTAACTCGCTTCGTCGACTCAGATCGTTAACTCGTGACTCGGATTATAACCGCTCTCTCATTGCTTCTCACAACGTTCGTCATATTGTTTTACCTATTCTTTTCGATTACAACGGTTTAGACGAGTTGAAATATGAGTCACTTGCTTTACTTGTTCTTTTTCCACTCAGTGAGTCTGATTGCACTTCACTCGCTTCAGATTCAGATAAGATTAACTACCTCACGAGTCTTCTTTCACACTCTTTATTTGATGTCCGAGTTAACTCGGCCGCGTTAATTGAAATCGTTGTCTCCGGGACTCACTTGCCTGAGATCCGTTCTCAGGTGAGTAATGTTGACGGGATCTACGACGGTGTTGTTGAGATACTCAGGAATCCGATCTCGTATCCTCGTGCACTCAAAGTAGGGATTAAAGCCTTATTCGCGCTATGTTTGGTGAAACAGACGCGCCACCGTGCTGTTGCAGCTGGTGCGCCTGCGGTACTTGTCGATCGGCTTGCAGATTTCGAGAAGTGTGATGCGGAGAGAGCCTTGGCGACGGTGGAGTTATTGTGCCGAGTTCCGGCAGGTTGTGCGGCGTTCGCCGGTCATGCGCTAACAGTACCAATGCTTGTGAAGATAATACTGAAGATATCAGATCGTGCGACGGAATACGCTGCCGGAGCGCTAATGGCGCTGTGTTCTGAATCGGAACGGTGTCAACGTGAGGCGGTTGCGGCGGGAGTGCTGACTCAGCTTTTGCTTTTGGTTCAAAGTGATTGCACTGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTAAAGCTTCTTCGGGATTCGTGGCCTCAAGACTCCGTTGGAAATTCTGACGATTTTGCATGCAGccattttgattaa 1236 0.4798 MRGVLQPLDLAIQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRVNLTDFTFIPNHTLRRLIQEWCVANRAFGVQRIPTPKQPADPSLVRSLLNQISSHSTPAQIKLNSLRRLRSLTRDSDYNRSLIASHNVRHIVLPILFDYNGLDELKYESLALLVLFPLSESDCTSLASDSDKINYLTSLLSHSLFDVRVNSAALIEIVVSGTHLPEIRSQVSNVDGIYDGVVEILRNPISYPRALKVGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFACSHFD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03313 411 Gene3D - 90 402 IPR011989 -
Tsu02g03313 411 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Tsu02g03313 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 89 IPR013083 -
Tsu02g03313 411 CDD RING-Ubox_PUB 18 59 IPR045210 -
Tsu02g03313 411 PANTHER WDSAM1 PROTEIN 4 407 IPR045185 GO:0061630
Tsu02g03313 411 SUPERFAMILY RING/U-box 11 89 - -
Tsu02g03313 411 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Tsu02g03313 411 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 407 - -
Tsu02g03313 411 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Tsu02g03313 411 SUPERFAMILY ARM repeat 103 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03313 Tsu-Chr2 37092467 37094717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03313 1 405 U-box Gene Family AT1G49780 64.891 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03313 - - gmx:100778730 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03313 02 37092467 37094717 Tsu02g03313 02 37092467 37094717 ECH