Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03311 ATGTTAGCTCGTGGCAGTGGAGAAGAGATTGGAACatgttttgaaaaacttatgttACTGATGTTGTTGGGTCCAATATTCGAATTGATAGCAAAGGACTTTGAAGTCATGCACATTGTTCCTCGTTTAAATGAGGCTCAATACATATCGAAGCTTGTTAAAATTGCTGGGATAACTATTTCTGCATCTAGGACTAAGGCAAAGGCAACATATGTGACCTTGATATGTAAGAAGTGTAAGAAAGGGAAGCAAGTTCTGTGTCGGCTAGGACTTGGGGGAGCAGTTGTTCCTTGTTCATGTGATCATGTTCCTCAGccTGGAGAAGAACCTTCTCCAATAGATTTGTGGCTTATTGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTATGTCGGCTAGGACTTGGGGGAGCAGTTGTTCCTTGTTCATGTGATCATGTTCCTCAGccTGGAGAAGAACCTTCTCCAATAGATTTGTGGCTTATTGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGCTGCAAGAAAATCCGGAGGATGTTCCAACCGGAGAGCTTCCTCGAAACCTGCTCCTTTCTGTTGATCGACATCTTGTTCCAACAGTAGTTCCTGGCTCAAAATTAACAATCATTGGAATATATAGTATTTTTCAGGCTTCCAACTCTAATACATTCAACAAAGGAGCAGTTGCAGTTAGACAGCCTTATGTTAGGGTTGTAGGAATAGAAGATGCAAATGAAGCCAAGTCTCGAGGTCCTACTGCATTTACAACAGAAGAAATTGAAGAGTTGTGGCTGTCTTCTATTTGGAGGGTCAAGAAAGCATTTGCCAGATGGGGTGAGATTAAGAGCAAAGTCAGTTTCTCAAGTTTGTTGAAAAGACTGCTTGCTGTTTATACTTCTGGAAAAGACTCATCAGCTGCTGGCCTCACAGCCTCTGTAATCCAAGATAGTAGTACTCGTGAGTTTTATCTTGAAGGAGGAGCCATGATCTTGGCAGATGGAGGTGTTGTCTGCATCAATGAGTTTGACAAGATGAGACCAGAAAATAGGGTTGCCGTTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACCGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGGCGTTATGATGACCTTAAGACTGCACAGGACAACATCGATTTACAAGAGACTAACAAGTTCATAAATGTTTCTAGGTTTGATTTAATCTTCATAGTGAAATACCTCCGAATGTACAAACAAGATAAGATAATAGCTGGTCATCATATCATAAAGATTCATTCATCAGCTAGTGCAACGAGGGGTGGGAATAGGACTCCCGTTTCCAAAGAAGAAAATTGGCTGAAGAGTATTGTTGAACTGAATGCCACCCCCGTCTATCGGAAGCTGCAGCAAGATTACTGCAAAATAATTATGTGA 1476 0.4092 MLARGSGEEIGTCFEKLMLLMLLGPIFELIAKDFEVMHIVPRLNEAQYISKLVKIAGITISASRTKAKATYVTLICKKCKKGKQVLCRLGLGGAVVPCSCDHVPQPGEEPSPIDLWLIVPDKSKYVDQQTLCRLGLGGAVVPCSCDHVPQPGEEPSPIDLWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVPTVVPGSKLTIIGIYSIFQASNSNTFNKGAVAVRQPYVRVVGIEDANEAKSRGPTAFTTEEIEELWLSSIWRVKKAFARWGEIKSKVSFSSLLKRLLAVYTSGKDSSAAGLTASVIQDSSTREFYLEGGAMILADGGVVCINEFDKMRPENRVAVHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQETNKFINVSRFDLIFIVKYLRMYKQDKIIAGHHIIKIHSSASATRGGNRTPVSKEENWLKSIVELNATPVYRKLQQDYCKIIM 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03311 491 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 300 473 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 41 268 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 SMART mcm 37 487 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 Gene3D - 46 131 IPR012340 -
Tsu02g03311 491 Pfam MCM P-loop domain 300 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 ProSiteProfiles MCM family domain profile. 301 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 SUPERFAMILY Nucleic acid-binding proteins 141 243 IPR012340 -
Tsu02g03311 491 SUPERFAMILY Nucleic acid-binding proteins 40 131 IPR012340 -
Tsu02g03311 491 PRINTS Mini-chromosome maintenance (MCM) protein family signature 332 346 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 PRINTS Mini-chromosome maintenance (MCM) protein family signature 360 373 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 396 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g03311 491 Gene3D - 68 126 - -
Tsu02g03311 491 Gene3D - 157 252 IPR012340 -
Tsu02g03311 491 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 41 268 - -
Tsu02g03311 491 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 300 473 - -
Tsu02g03311 491 Pfam MCM OB domain 46 221 IPR033762 -
Tsu02g03311 491 Gene3D - 289 491 IPR027417 -
Tsu02g03311 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03311 Tsu-Chr2 37058333 37066244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03311 48 485 Core DNA Replication Machinery Family AT2G07690 57.025 3.71e-173 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03311 K02209 - gmx:100800649 519.62