Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03310 ATGGCCATGACTGTAGATCATGATCAAGGTTTTCATGCTGGTTTCATGTGGGAAAATCCATCTTGGTGTGATCTCACAAATTCTGATAACTTAGGTGAGAGTAGCAAACCAAAGTCAGACATGAAATCAATGAACCAGAACGAAGAACTTAACGGTGGAGAAGCTCTTGCGCATAAGAAGCGCAAGCGAGGTGGGGCTGTGGCGAAAAGTGAGAGTAATACTACAATTGGTGAAGGAAAAGATGGAAAGTATCGCGGTTCAGATCATGAAATGCACATATTGACTGAGagagaaaggagaaagaaaatgaGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCTCAACTTCCTTCTAAGGCTGATAAATCAACCATAGTGGATGAAGCTGTGaagcaaataaaaaatctaCAACAAGTTCTTGAAAACCTAGAAAAGAAGAAGCAAGAAAAGCTCAAATCTGTATCCCCATTTGGGAGTGAGTCatcatcaatgatcaacaactcACAGTGGAATCCCTATGAATCAAGGGATGCAATCTTAGCTGATCAAGGGTCCTcaagttataataataataacttgccTATAAGTGCAATTGTAACTTCAAATCCTTCAAATGCACTATCACTATCTGCACCTCCACCTCAACAAGTAGTTTTTCAAACTTGGTCTTCTCAAAATGTTGTCTTGAACATTTGTGATGGTGAAGCACAATTTTGCATATGTTCTACTAAGAAGCCTGGTCTCTTGACAACAATTGCTTTTGTTTTGGAGAAACATATGATTGATGTTGTATCTGCCAACATTTCATGCAATGGAAATGGAATCTTCTGCATGATTATGGCTCATGCAAAACAAGGTTCACATCAAGTTGCAAATTCATTGGAGGAAATTTACAAGCAAGCGGCTTCAGAAATTATAACGTGGATCTCTTAA 936 0.3632 MAMTVDHDQGFHAGFMWENPSWCDLTNSDNLGESSKPKSDMKSMNQNEELNGGEALAHKKRKRGGAVAKSESNTTIGEGKDGKYRGSDHEMHILTERERRKKMRNMFASLHALLPQLPSKADKSTIVDEAVKQIKNLQQVLENLEKKKQEKLKSVSPFGSESSSMINNSQWNPYESRDAILADQGSSSYNNNNLPISAIVTSNPSNALSLSAPPPQQVVFQTWSSQNVVLNICDGEAQFCICSTKKPGLLTTIAFVLEKHMIDVVSANISCNGNGIFCMIMAHAKQGSHQVANSLEEIYKQAASEIITWIS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03310 311 MobiDBLite consensus disorder prediction 28 86 - -
Tsu02g03310 311 Coils Coil 127 154 - -
Tsu02g03310 311 MobiDBLite consensus disorder prediction 28 50 - -
Tsu02g03310 311 Gene3D - 81 154 IPR036638 GO:0046983
Tsu02g03310 311 CDD bHLH_AtbHLH_like 92 142 IPR045239 -
Tsu02g03310 311 PANTHER - 11 309 IPR044278 GO:0003700|GO:0006355|GO:0009960
Tsu02g03310 311 Pfam Helix-loop-helix DNA-binding domain 90 138 IPR011598 GO:0046983
Tsu02g03310 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983
Tsu02g03310 311 PANTHER TRANSCRIPTION FACTOR BHLH95 11 309 - -
Tsu02g03310 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 158 IPR036638 GO:0046983
Tsu02g03310 311 SMART finulus 93 143 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03310 74 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.098 7.08e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g03310 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03310 - - mtr:MTR_4g085700 406.371