Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03280 ATGAGGAAGCCTAATTGTGATACGAAATTAGACAAGAACATCAACAAAGGAGTTTGGTCAAAACAAGAAGATGAGAAACTCGTAGATTATATCAACAAACACGGTGAGGTTTGTTGGAGTACACTCCCTCAAGCTGCAGGTCTACTTCGGTGTGGTAAAAGTTGTAGGCTAAGATGGATGAATTATCTAAGGCCAGATGTTAAAAGAGGCAACTttggtgaagatgaagaagatctCATCATCAAGCTTCATGCACTTCTTGGCAACAGGTGGTCACTAATTGCTGGGAGATTACCTGGACGTACTGATAATGAAGTGAAGAACTTTTGGAACTCTCATATAAGAAAAAAGTTGATTAGAAAGGGAATTGATCCAAATAATCATAGTTTAAACCACAAAATCCCTTCCCTTCAAAACCAAATCGTGTCTAATActagtttaaaatattttgagttgAAAGACATTAGCAagaatcaaacaacaaaaacccACTTCGACAATTATGATAAAGTATCAAATGCAACAAGTGGCAAGGATGAGTCATATGCTCTATTGGATTTAAATCTAGAGCTCTCACTATGA 582 0.3316 MRKPNCDTKLDKNINKGVWSKQEDEKLVDYINKHGEVCWSTLPQAAGLLRCGKSCRLRWMNYLRPDVKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNFWNSHIRKKLIRKGIDPNNHSLNHKIPSLQNQIVSNTSLKYFELKDISKNQTTKTHFDNYDKVSNATSGKDESYALLDLNLELSL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03280 193 SMART sant 15 65 IPR001005 -
Tsu02g03280 193 SMART sant 68 116 IPR001005 -
Tsu02g03280 193 Gene3D - 8 68 - -
Tsu02g03280 193 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tsu02g03280 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tsu02g03280 193 Gene3D - 71 170 - -
Tsu02g03280 193 CDD SANT 71 114 IPR001005 -
Tsu02g03280 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tsu02g03280 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 192 - -
Tsu02g03280 193 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Tsu02g03280 193 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Tsu02g03280 193 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tsu02g03280 193 CDD SANT 19 63 IPR001005 -
Tsu02g03280 193 PANTHER MYB-LIKE TRANSCRIPTIONAL FACTOR MYB76 2 192 - -
Tsu02g03280 193 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03280 Tsu-Chr2 36716670 36718528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03280 2 193 MYB Transcription Factor Family AT4G38620 52.113 2.46e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g03280 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03280 K09422 - gmx:100814923 288.5