Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03279 ATGATTTCTAAGATGCCGTCTTATGATTTGTCTCAGCCCTTGGCCCAAGAAATCAGTCAAGTTCTTGGCAAATCTGTGAGTGGATTGCATAAACAACACAGCTGTCCTGAAAATCTATCAGAACTAGGCAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGCAGCCCATGTGGGGCAGGATCTCGATTGGAAAGAACAAGGAGCATCCATGCTTCTTCTGAGGTTTCCATATCGGTTTTAACTGCTCCTAAAAGTCAAGAAATTTCTGGGAGCATGAATATACCTGAAGATAAAAAACCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATTGATTGTGGAAATACAACCTGTCCAAAAACTCAGCAAAAGCTCCAACATTTGACCCTTACGCCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGAGCACAACATTGAACAACCAACAGGACTAActaatggaaaaataaaaaagagtgatGGATCATTCAGAGATGTTACAGGTGACATAGCGGCAATTGAAACTCTAGTCCGGAAGCTCTCCTGCAGGTCCATTGAGGAGTGTAGAGCAGCTGTTGCTGAAATTCGTTTATTATCCAAAAGAAGCACTGACAACAGGATACTAATTGCCGAGGCTGGAGCAATACCAGTTCTAGTCAACCTTTTAACTTCCGAAGATGTAATGACACAAGAAAATGCGGTTACATCAATTCTCAATCTTTCTATATATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCCATTGTCCAAGTTCTCCGAGCTGGGACCATGGAAGCAAGAGAAAACGCGGCAGCAACGCTTTTTAGCTTGTCACTTGCAGATgagaacaaaataataattggcGCCTCAGGAGCTATATCCGCTTTGGTAGAATTGCTCCAAAATGGAAGCCCTAGAGGGAAGAAGGACGCAGCAACAGCACTGTTCAATTTATGCATATATCAAGGGAACAAGGGCAGAGCCATAAGAGCGGGGATCATCACAGCACTGTTGAAAATGCTGACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTTACAATTATGTCGGTTCTTGCCAGCCACCAAGAGGCAAAGGCTACCATAGTAAAAGCCAGCACTATACCAATTTTAATAGATCTTTTGAGGACGGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCTTTGTGCAAGAGGGATACCGATAATCTTTCTTGCATCAGTAGACTCGGTGCTGTCATACCTCTTTCTGAACTTGCTAGGACCGGTACAGAGAGAGCAAAACGAAAGGCTACTTCACTATTGGAGCATCTTCGTAAGTTACAACAGCTTTGA 1455 0.4144 MISKMPSYDLSQPLAQEISQVLGKSVSGLHKQHSCPENLSELGSIPKSNEGKSCSPCGAGSRLERTRSIHASSEVSISVLTAPKSQEISGSMNIPEDKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSCRSIEECRAAVAEIRLLSKRSTDNRILIAEAGAIPVLVNLLTSEDVMTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKATIVKASTIPILIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03279 484 Gene3D - 384 483 IPR011989 -
Tsu02g03279 484 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Tsu02g03279 484 Pfam Armadillo/beta-catenin-like repeat 235 273 IPR000225 GO:0005515
Tsu02g03279 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Tsu02g03279 484 CDD RING-Ubox_PUB 109 151 IPR045210 -
Tsu02g03279 484 SMART Ubox_2 108 171 IPR003613 GO:0004842|GO:0016567
Tsu02g03279 484 SMART arm_5 234 274 IPR000225 GO:0005515
Tsu02g03279 484 SMART arm_5 357 397 IPR000225 GO:0005515
Tsu02g03279 484 SMART arm_5 398 438 IPR000225 GO:0005515
Tsu02g03279 484 SMART arm_5 275 315 IPR000225 GO:0005515
Tsu02g03279 484 SMART arm_5 316 356 IPR000225 GO:0005515
Tsu02g03279 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Tsu02g03279 484 Gene3D - 187 280 IPR011989 -
Tsu02g03279 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 410 IPR000225 GO:0005515
Tsu02g03279 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 286 328 IPR000225 GO:0005515
Tsu02g03279 484 SUPERFAMILY RING/U-box 97 179 - -
Tsu02g03279 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Tsu02g03279 484 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 30 481 - -
Tsu02g03279 484 Gene3D - 281 383 IPR011989 -
Tsu02g03279 484 PANTHER U BOX DOMAIN-CONTAINING 30 481 - -
Tsu02g03279 484 Coils Coil 464 484 - -
Tsu02g03279 484 Pfam U-box domain 105 176 IPR003613 GO:0004842|GO:0016567
Tsu02g03279 484 SUPERFAMILY ARM repeat 204 478 IPR016024 -
Tsu02g03279 484 ProSiteProfiles U-box domain profile. 104 178 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03279 Tsu-Chr2 36700793 36703339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03279 3 480 U-box Gene Family AT1G71020 65.702 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03279 - - gmx:100815448 825.854