Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03268 ATGAAAAGACTATCTCGTTGCAAGAGTATTGCTgcgagagaaagaagaagaaagataacTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACAGCAGAGATGCTTAATGTTGTTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATACTTCAAGTTATGGGAACATTAAGCAAGAACGTCGATCCGGCTCCGATCCTCTTCTCCGGCGATTCTGAACACGATTCCGATCGCCCAGGATTCTCAAGGTCAGAGTCAATCAGGATAAAAGTTGCTGCTTCACATTAG 312 0.3942 MKRLSRCKSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNVVANYVKFLQAQVGILQVMGTLSKNVDPAPILFSGDSEHDSDRPGFSRSESIRIKVAASH 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03268 103 Gene3D - 3 70 IPR036638 GO:0046983
Tsu02g03268 103 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 9 67 - -
Tsu02g03268 103 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 61 IPR036638 GO:0046983
Tsu02g03268 103 Pfam Helix-loop-helix DNA-binding domain 8 53 IPR011598 GO:0046983
Tsu02g03268 103 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 52 IPR011598 GO:0046983
Tsu02g03268 103 SMART finulus 9 58 IPR011598 GO:0046983
Tsu02g03268 103 CDD bHLH_AtbHLH_like 8 60 IPR045239 -
Tsu02g03268 103 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03268 Tsu-Chr2 36575353 36580422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03268 2 70 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 63.768 6.53e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g03268 HLH 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03268 - - mtr:MTR_1g060700 105.531