Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03257 ATGGCAGTTTTACCTACAAATTCATCCAGCTTGGAATTGACCATATCCATCCCAGGTTTTGCTTCTTCACCAACCACTTTTCTCACCTCATCAACCGTGAAAAAATTGGACATGAATCGAGTAGCCATAGAAGAAGAATGGATGGAagtagaagatgaagaagaaaacagCGTTAATGGCGTCGTCACTCCTCGCAAAAAACTTCGTCTGACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGATTCAGAACAAATCACACTTTAAACCCAAAGCAGAAAGAGAGTTTGGCAATGCAGCTGAAGCTCCGACCAAGGCAAGTGGAGGTGTGGTTTCAAAACCGTAGGGCCAGGAGCAAGTTAAAGCAAACAGAGATGGAATGCATGTACTTGAAGAGGTGGTTTGCGACCCTGACAGAACAAAATCGGAGGTTACAAAGAGAAGTTGAAGAACTGAGAGCTATGAAAGTGGGTCCACCCACTGTGTTATCCCCTCATAGCTGCGAGCCACTTCCAGCTTCAACACTATCTATGTGTCCCCGCTGTGAGCGTGTAACCACCAACACCGCCGATAAATTTGTCGCGGACGACGTCACTTTGTCCCCTAAAGTGTCCACGCCTGTCCTGCATTCGCGTTAA 636 0.4513 MAVLPTNSSSLELTISIPGFASSPTTFLTSSTVKKLDMNRVAIEEEWMEVEDEEENSVNGVVTPRKKLRLTKEQSRLLEERFRTNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECMYLKRWFATLTEQNRRLQREVEELRAMKVGPPTVLSPHSCEPLPASTLSMCPRCERVTTNTADKFVADDVTLSPKVSTPVLHSR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03257 211 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Tsu02g03257 211 SMART HOX_1 63 125 IPR001356 GO:0003677
Tsu02g03257 211 Gene3D - 71 117 - -
Tsu02g03257 211 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Tsu02g03257 211 Coils Coil 134 154 - -
Tsu02g03257 211 CDD homeodomain 64 122 IPR001356 GO:0003677
Tsu02g03257 211 PANTHER - 1 195 - -
Tsu02g03257 211 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Tsu02g03257 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 195 - -
Tsu02g03257 211 SUPERFAMILY Homeodomain-like 58 122 IPR009057 -
Tsu02g03257 211 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Tsu02g03257 211 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03257 Tsu-Chr2 36438933 36446320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03257 33 185 Homeobox Transcription Factor Family AT1G70920 58.385 3.82e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g03257 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03257 K09338 - gmx:100775341 298.901