Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03253 ATGCAGAAAACCAGTTCTGGCCGTGCATCATCTGCTTGTCATGCCATGGAAAATTTGAATGAATCGTCAATTTCAATTGTTGAAGGTGTAAACAAATGGGTCAACTCCATCCATGAAAGTATTTTGCCAAATAGCCAAGACAGTTTTTTTGATTATACACCGCATTTGGATATGGAGTTTGACTCTGAGGTAGCagcatatgaattttttaatgagTACAGTAGGAGAATTGGATTTGGTATTCGTCGAGAATACGGCAATAAAAGCAAAATAGATGGAATTCTGACTTCAAGAAGATTCTCGTGCTTTAAAGAAGGTAGACGGGGTGCTGACAAACGAGACCACTTGACAAAAGAGTCTAGAGCAGAAACTAGAACTGGATGTAAAGCACGTATGGTTATTTCACTTGATCGAAAAATTGGAAAATACAAGGTTGTCGACTTCGTAGCTGAACATAGTCACCCTCTTCAACCACCAGGGTATGTTCATATGATTCGCTCTCATCGACGCATATCTGAGTCACAAGCCTCACAAATCGTGTTGGCTGATGAATCAGGATTAAAACCAAAAGATTTCCATGCGTATGTGTCCAAGCAAGTTGGTGGAATAGACATTGTTGGTTATACAAGACAAGACCATAAGAATTACCTTCGAACTAAAAGGAATCACTCATTAAGGTATGGTGAAGTTGGTGCATTGTTGATGTATTTCAAAGGACAAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTGGAAGatcaaataacaaatatattttgggcGGATGCACAAATGATAAACGATTATGGATATTTTGGTGATGTCATCACTTTTGATACAACATACAAGACAAACAAGGATTATCGACCATTGGGAGTATTTGTTGGACTTAATAATTTCAGACAAACAATTGTTTTTGGGGCAACATTACTCTATGATGAAACAATTCCTTCTTTTAAATGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTTTAACAGATCAAGATGTAGCAATGGCTAAGGCTATTTCTCTTGTTATGCCTGAAACGTTTCATGGACTATGCACCTGGCATATAAGAGAAAATGCCCTAAGGCATGTTAACCATCTATATCAAAAAAGTTCACAATTTAACTCGGATTTTGAAGCATGCATTGATCtacatgaagaagaagatgaatttctGAACGCGTGGAATGCTTTACTTCTTGAGCATAAAGTTTCCGATGATTCATGGCTACATTCAATTTTCCGTGTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAAACTTTCACTGCGGGTATGAGATCTACTCAACTAAGTGAGAGCTTCAATGCTGATTTGAAAAAACATTTGAAGTCGGATTTAAATTTAGTTCAATTTTTCACACACTTCGAAAGGGTTGTaaatggaaaaagaaacaaTGAGTCAGAAGCCGATTTTGAGTCAAGACATAAACTTCCTAAGTTGAAAATAAAGGCTCATATGCTTGTTCAAGCGGGCAACATTTACACTCCAAAAATATTTGAGGAATTCCAAGAGGAATATGTTGAATTTCTAGGCACTTGCATAAAGAATTTGAATGACGGGCTGTATATTGTTATAAACTATGATGATAATAAGGAGCGGAAAGTAATAGGGAATTTTGAGGATCAAAAGCTAATTCCTTCACACTATATACTCAAGAGATGGACAAGAGATGCAAGGTCGGGAAGTAATCAAGATTGGAAAGGACAACATATCAATTTAGACATAAAAGCTCATTTCATGAAGCGATACAATGATTTATGTCCTCGGATGGTTAAATTAACTAACAGAGCATCTGAAACTCATGAAGGTTACACTTTTCTGTCCAAAGTTTATGAGGAGTCCAACAAGATAATCGATATGTTGGCTAAAAAGCCTACGGATGAGGAATCAATTGGAATGTGCCACGTATCCATATCAATTGAAAATGCTGAAGCAAAAGGAATAAAGAAGAGAGAATGCTCGAATAAGAGTAATAAACGACCTAAATCTTGGAACGAGAAATTGGCTAGAAAGAGAAAGGCAAACATAtcacagaaaaagaaaaaaactcaaGAAAATTTGGAAAAATCTGCAGCAACAAATGATGGTGCACATACCCTTCATTCAAGTCACACTTTTACTCAATTGTTGACTCAACCACTGGACTACAATTTAATTTCACTATCCTCGGATCATGTAATTTTGGATGGAAGCCAAAGTGGAAGTGGAAGCCAAGTTGACATGTTGGGATGTATGTCTAATGGCACTACTTGTTGGGGTATGATTTTAAGAAATCATGTTGGTGCTGTCATTTATGCAGCCACTAAGAAAGAGAATGTGCAGGTTTCTCCTCTGTTAACTGAAGCTCTAGGCATGAGATGGACCTTGTTGTGGCTTAATGAAAACAATTATGAGAATGTAGTCATGGAAACAAATGATGAACAAGTGGTCAAGTGTCTCAAGAACCAATATTTGTGTCTTTCATTTCTAGGAAAAAGAATATAG 2547 0.3545 MQKTSSGRASSACHAMENLNESSISIVEGVNKWVNSIHESILPNSQDSFFDYTPHLDMEFDSEVAAYEFFNEYSRRIGFGIRREYGNKSKIDGILTSRRFSCFKEGRRGADKRDHLTKESRAETRTGCKARMVISLDRKIGKYKVVDFVAEHSHPLQPPGYVHMIRSHRRISESQASQIVLADESGLKPKDFHAYVSKQVGGIDIVGYTRQDHKNYLRTKRNHSLRYGEVGALLMYFKGQSENPSFFYDFQMDVEDQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNFRQTIVFGATLLYDETIPSFKWLFETFLKAMGGEKPKTILTDQDVAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFNSDFEACIDLHEEEDEFLNAWNALLLEHKVSDDSWLHSIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKKHLKSDLNLVQFFTHFERVVNGKRNNESEADFESRHKLPKLKIKAHMLVQAGNIYTPKIFEEFQEEYVEFLGTCIKNLNDGLYIVINYDDNKERKVIGNFEDQKLIPSHYILKRWTRDARSGSNQDWKGQHINLDIKAHFMKRYNDLCPRMVKLTNRASETHEGYTFLSKVYEESNKIIDMLAKKPTDEESIGMCHVSISIENAEAKGIKKRECSNKSNKRPKSWNEKLARKRKANISQKKKKTQENLEKSAATNDGAHTLHSSHTFTQLLTQPLDYNLISLSSDHVILDGSQSGSGSQVDMLGCMSNGTTCWGMILRNHVGAVIYAATKKENVQVSPLLTEALGMRWTLLWLNENNYENVVMETNDEQVVKCLKNQYLCLSFLGKRI 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03253 848 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 537 IPR031052 GO:0006355
Tsu02g03253 848 PANTHER OS03G0181600 PROTEIN 44 537 - -
Tsu02g03253 848 PANTHER OS03G0181600 PROTEIN 563 641 - -
Tsu02g03253 848 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 563 641 IPR031052 GO:0006355
Tsu02g03253 848 MobiDBLite consensus disorder prediction 672 719 - -
Tsu02g03253 848 CDD RNase_H_like 767 836 IPR044730 -
Tsu02g03253 848 Pfam FAR1 DNA-binding domain 68 158 IPR004330 -
Tsu02g03253 848 MobiDBLite consensus disorder prediction 672 693 - -
Tsu02g03253 848 Pfam MULE transposase domain 278 372 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03253 Tsu-Chr2 36390522 36394543 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g03253 MULE 3.9e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03253 - - cam:101500125 1098.19