Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03252 ATGGATGATGAAGTTGTTCAACGAGTTTTCCATGAAGGTGGACGCGATTACTTCCAACAACAACCTTCAACTTCTTCCTCATCGATTCTCCAATCTCTCCCTCTCCATGTgTCTTTTGATCATGGATATTATTTGTTGGTGAAATCTATTCAAGAACTACGAGAGAAAAAGGACGGCCTTGTTACAGTTGGCATTGGTGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACAGAAAAGGTGGCATCTGTTTTTGGCTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGGAATGTTCTGGATTCTATAGATTTTGATACATTGATCAAGAATCTTGAGGATTTGACAAAAGGCAATGATACATTAGTTCCAGAGTTTGATTATCAGCAAAAGAGACGTGttggttataaaaaaataatgagtgCTTCATCTGGGGTGGTAATAGTTGATGGTACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCAGTGGTTGGCGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGGTATGACATTGGAGATTCTTGTTCACTGGATTACCTAATAGATAGCATTTTTCCATTATTTAGGAAGCACATCGAGTCAGATCTTCATCATGCTCAGATCAGAATTAACAACAGCTTTGTGTCATCATTTAGAGAGGCAATCTACAAGGTCAAATGCAGAAGCGAGTCTTCAGATGAACATCCAGGTTCTTCCTTGCAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAGGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGGTACTATTTATCCCTTGGTGACCAGAGGATTGTTGACAAACATTTCATCATCCGGCCGAAAGCTGAGTTTGAGGTTGGACGAATGACGCTGGGCGGGTTGCTGGCTCTTGGGTACATTGTTGTGGTTAGTTATAAACGCGCATCCACAACTGTCAATTATGGCAAGGTTTCAATGTCATTTGAAACCATTGATGTTCTTGGTGAGACATTCATGGTCATGAGAGGAACCGATAGGAagACTGTTGGAACAGAAGCATTGAAAATGGGTATCAATGGACCTTGGCTTACTAAATCATATCTGGAAATGATTCTTGAGAGAAAAGGTGTACCCCGTCTTAGTACACCACCACTTGTGTCTAATGCAACTGTGGCTGGTAGTCAAGAAACAGCAATAGTTGCACCAAAGCCAATTCGTGTTACCACTACTCTTGTTACTGGGCTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAACTAAATCAAAAACAGAACCTTTTGTGGCTACCTGGCATTTCATGTCTTCAGATTCTTCCCATCATGACAACACAGTCCTAGATCCCTCTTCTTTCAGGGACACTGTTAAGCTTGCTCCAATGCCTGATTCATATGACCTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCATTGTTGGAAAATAAAGGTGTCCCAGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAATAGTTTCCTTAGAAAGTTATTACAAACAAGTTAAGGATTTTAAATATGATGACTTCAGCTCACTAGATTTATCTTTGCTATCAAAGAATATTGATGATATAAGAAATGGCCGAAGAACCAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTAATTTCACGAGTTCAAAGGGATAAGAGTAGAGTCGGGTGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGTAATGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAAAAAAGTAGCTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAGTTTATTGATATTTACATGAGACTTCCTGGGATCCCTTCTAATGGTCAATTGACAGATAGTGATTGTATTCGGGTCAGAATATGTGAAGGCAGATTTGCATTACTGATACGCGAGccTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCTGGTCTTCTTAACCTTGGGTATCAAGCAGTTGCTTATATCGAAGCGTCTGCGTTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTGCAAGATGTCCCTGGTCAATACATTCAGATAAAGGGTGTTTCTAAAGATGCTGTGGCAGCAGCCGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTACCAACAACTGAGAGAAGTTCTGGTGGGATTAACTTTCAGCAATCAACAAGGCTGCTAGAGATTGTGGACTTTATTCAATCTCAGGGATGCAGCTCTTCTTCAGAATCCTCGTCAAGTAGGGTAGTCTCTCCGATTGAAGGCATTATTGAGGAGATGCAATCAAAGATTAGAAGGCTCGAAAAATGGCTTGCTATAAATACGGTTCTCTGGACATTTCTAATGTCAGCAATTGTTGGTTATTCACTTTATCAAAGGAGGCGTCAGGTAACTGTATATCGTCGTGGATCTGTTAGAAGTCGTTGCAATCGTAGCAGTTGTAGAGGACCACCCAGATGCTTTTTTCGAGCAACAGTCTTCGGTGATCGTCCTCGTCCATCTTCTAAGCTTGAACCTTCCTCCTCTTCCCAGGACAAGCCTGTGTTAGAGGACGATTCTGATTCTCACTCTCTTTTGACTATGTGTTCCGGTACCTCTACTGTTGGAGAAGAAAAGGGAACTACCAAACAAAGTTCCGATTCTGATTTTCATTCTACTGTTAAAGTGGCGGTGAAGGATctcaagaaagaaaagaaaagccGTGATGGATCTGAAGAAAAGAGAGgaaagaaaactaaaataaagtCACTGTGA 3216 0.3961 MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVFGCTVISMENYCDGVDEGNVLDSIDFDTLIKNLEDLTKGNDTLVPEFDYQQKRRVGYKKIMSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIESDLHHAQIRINNSFVSSFREAIYKVKCRSESSDEHPGSSLQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKHFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNYGKVSMSFETIDVLGETFMVMRGTDRKTVGTEALKMGINGPWLTKSYLEMILERKGVPRLSTPPLVSNATVAGSQETAIVAPKPIRVTTTLVTGLEDLSQPWTRSPTKSKTEPFVATWHFMSSDSSHHDNTVLDPSSFRDTVKLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGCGKTSLAHKMANIIGCEIVSLESYYKQVKDFKYDDFSSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGQYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTTERSSGGINFQQSTRLLEIVDFIQSQGCSSSSESSSSRVVSPIEGIIEEMQSKIRRLEKWLAINTVLWTFLMSAIVGYSLYQRRRQVTVYRRGSVRSRCNRSSCRGPPRCFFRATVFGDRPRPSSKLEPSSSSQDKPVLEDDSDSHSLLTMCSGTSTVGEEKGTTKQSSDSDFHSTVKVAVKDLKKEKKSRDGSEEKRGKKTKIKSL 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03252 1071 Gene3D - 514 691 IPR027417 -
Tsu02g03252 1071 Pfam Phosphoribulokinase / Uridine kinase family 517 682 IPR006083 GO:0005524|GO:0016301
Tsu02g03252 1071 Pfam Phosphoribulokinase / Uridine kinase family 106 202 IPR006083 GO:0005524|GO:0016301
Tsu02g03252 1071 MobiDBLite consensus disorder prediction 1010 1039 - -
Tsu02g03252 1071 Gene3D - 701 862 - -
Tsu02g03252 1071 CDD UMPK_like 62 224 - -
Tsu02g03252 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 685 IPR027417 -
Tsu02g03252 1071 CDD UMPK_like 517 685 - -
Tsu02g03252 1071 SMART AAA_5 514 658 IPR003593 -
Tsu02g03252 1071 SMART AAA_5 59 209 IPR003593 -
Tsu02g03252 1071 Gene3D - 61 241 IPR027417 -
Tsu02g03252 1071 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 475 602 - -
Tsu02g03252 1071 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 602 941 - -
Tsu02g03252 1071 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 418 - -
Tsu02g03252 1071 MobiDBLite consensus disorder prediction 985 1071 - -
Tsu02g03252 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 172 IPR027417 -
Tsu02g03252 1071 PRINTS Uridine kinase signature 542 553 - -
Tsu02g03252 1071 PRINTS Uridine kinase signature 515 532 - -
Tsu02g03252 1071 PRINTS Uridine kinase signature 636 646 - -
Tsu02g03252 1071 SUPERFAMILY CYTH-like phosphatases 723 857 IPR033469 -
Tsu02g03252 1071 PANTHER URIDINE KINASE 475 602 - -
Tsu02g03252 1071 PANTHER URIDINE KINASE 602 941 - -
Tsu02g03252 1071 PANTHER URIDINE KINASE 2 418 - -
Tsu02g03252 1071 MobiDBLite consensus disorder prediction 1040 1071 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03252 Tsu-Chr2 36372842 36389988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03252 510 673 PRT Gene Family AT1G55810 24.719 1.52e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03252 - - mtr:MTR_4g084660 1711.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03252 02 36372842 36389988 Tsu04g03797 04 46894164 46901363 PCT