LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03229	ATGACTGTTAAAATTGGCACTATTACCACTGTGGTTATTTCCTCTCCAAAGATAGCCAAAGAAGCACTTCATAAAAATGACCAAGTTTTATCTAATAGATTTGTGCCACAATCTGTCCAAGCACTTTCACATGATAAAGCTTCTCTAATATTCATGCCTATTTCACCTAAATGGAAAACCCTTAGAAAAATTTGTGCTACCAAGATATTCTCTTCTCAACAGCTTGATTCTACTCAAGTTCTtcgtttaaaaaaattgaaagaactAGTTGTTTACTTGCAAGAAAATTGTAGAAAAGGTAAACCTATTGATATTGGTGAGGTTGCATTTACTATATCACTTAACTCAATATCAAACACTCTTTTCTCCATTGACTTAGCTAGTTTTACTTCTGGTTCTTCTCAAAAGTTTAGACATATTATTTCCTCTATGTTGATCGATTCTTCAAAGCCAAATATCGCAGACTATTATCCTATTTTGCGTAAAATTGATCCACAGGGAGTGCGACGAAGGATGAGCGGCCATTACCAGAAGTTGTTAACACTTTTTGAATCTATCATTGAAGATAGAACTAATCAAAAGGAAAATTCTACGATGGAAGAAAGTGATGTGTTAGACTCATTTCTAGAGATCATACAGAAGGAAAATCCTGAATTGACATTACATGATGTGTTACAtctatttttgGACTTATTTGTAGCTGGGACAGACACAACATCAACCACAATTGAATGGGCAATGGCAGAGTTGCTACAAAATCcagagaaattaaagaaaacaaGAAATGAACTTCAACAAGTTATCAAAAAAGATGAAGAACCTAAGGATTCAGATATCAATAAGCTCCCTTACCTACAAGCAGTTGTAAAAGAAACTCTTAGGTTGCATCCAACAGCTCCTATACTAGTTCGGCAATCTCGATCTGAGGTTGACTTATGTGGCTTCAAGGTACCAAAAGATACACTAGTTCTTGTTAATGTGTGGAGCATGGGAAGGGACTCGAGCATTTGGACAGACCCAAATTTGTTTCTGCCTGAAAGGTTTTTAGAAAGTGGAGAAGATTTTATAGGAGAAGATTTAGGGTTCATTCCCTTTGGAGCTGGTAGAAGAATGTGTTCTGGCGTTCCGTTTGCTCACAGGGTTGTGCATACTATGCTGGCTACTTTACTTTACCATTTTGATTGGAAGCTAGCTGATGGGGGAAAAATTGAAGACATGGACATGACTGAAAAATTTGGAACTACTTTGCATAAAGTCAAGCCTCTTATGGTTATTCCTGTCAAAGAATGA	1290	0.3535	MTVKIGTITTVVISSPKIAKEALHKNDQVLSNRFVPQSVQALSHDKASLIFMPISPKWKTLRKICATKIFSSQQLDSTQVLRLKKLKELVVYLQENCRKGKPIDIGEVAFTISLNSISNTLFSIDLASFTSGSSQKFRHIISSMLIDSSKPNIADYYPILRKIDPQGVRRRMSGHYQKLLTLFESIIEDRTNQKENSTMEESDVLDSFLEIIQKENPELTLHDVLHLFLDLFVAGTDTTSTTIEWAMAELLQNPEKLKKTRNELQQVIKKDEEPKDSDINKLPYLQAVVKETLRLHPTAPILVRQSRSEVDLCGFKVPKDTLVLVNVWSMGRDSSIWTDPNLFLPERFLESGEDFIGEDLGFIPFGAGRRMCSGVPFAHRVVHTMLATLLYHFDWKLADGGKIEDMDMTEKFGTTLHKVKPLMVIPVKE	429

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03229	429	Pfam	Cytochrome P450	1	415	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	243	269	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	18	39	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	362	372	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	286	304	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	326	350	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	223	240	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PRINTS	E-class P450 group I signature	372	395	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g03229	429	PANTHER	CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED	1	427	-	-
	Tsu02g03229	429	Gene3D	Cytochrome P450	1	426	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03229	Tsu-Chr2	36011910	36013418	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03229	1	429	Cytochrome P450	AT2G45570	44.495	1.33e-136	400

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03229	-		-	lja:Lj0g3v0020129.1	569.696

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