Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03192 ATGGAAAGAAGCGGTTACAGAAACAAAACCGGTGGTCGTGACGGTTATGGCGGTGGTGGTCGTGACGGTTATGGCGGTGGTGGTCGTGGCGGTTATGGTCGTGGCCGTAGCGGTTACGATGGTGGTGGTCGTAGCGGTTACGATGGTGGTGGTCGTAGCGGTTATGATGGTGGTGGCCGTAGCGGCAATGGTGGTAgtggaagaggaagaggaagagaaagagaaagagagtttTATCCGCAACACCAACCCAGTcccggtggtggtggtggtggtggtcgAGGGTTTTCTCAACAATCGCCAAACCAGTGGCAACCAAGGCCAAATCCACCTTCCCCCTTCACTCACCCAAGTTCATCTTCGGTTCCTCCTCCTTTCACTACGGGCAACGACAACCGTCAACCCGAAGTCAAACCTCATCCACGTTCCGATAATGGATCCCCAAACTTAAAAGAGCAGAAAGCGGAAACTACCACAATTGGGCCTATACACCGGCCTGACAAGGGAGGGACGATGTCAATTCGAAGCTGTACCCTTCGTGTGAATCATTTTCCGGTTACCTTCAATCCACAAAGCATTATTATGCACTACAATGTGGATGTGAAGGCTACCGTGCCACCGAAAAAGGGTTTGCCTCCGAAGAAGATTTCCAAGTTTGACTTGTCTATGATCAGGGACCAATTGTTTGCTGATCATCCTCAGACACTGCCTTTGTCGAAGACTGCTTATGATGGAGAGAAAAGCATCTTTAGTGCTGTGCCATTGCCCGAAGAAACTTTTACTGTGGAGGTCTCAAAAGGAGAAGATGAAAGAGTTGTTTCTTATACAGTAACTATAACACTGGTGAACAAACTCGAGCTTCGCAAGTTGAGAGATTACCTTAGTGGCACCGTCTTTTCCATTCCGAGGGATATTTTACATGGAATGGACTTGGTGGTGAAGGAGAATCCGGCAAGGAGCACAGTTGCTTTAGGAAGATATTTCTTTCCCAAAAATCCTCCCATTGTGCAGAGGGATCTTGAACCCGGAATAATTGCAATTGGAGGATTTCAACATAGTCTCAAGACCACGGCTCAGGGTTTATCATTGTGTCTTGACTCTTCAGTTTTGTCTTTCCGAAAGAAAATGTCAGTCTTGGATTTCCTCTATGATCGTATTAGGGGTTTCAATTTGGCtgagttttggaaatataagaAAGCTGTTGAGGAGGAACTCCTTGGAGTGAAAGTAAATGTCACTCACAGGAAAACCAAACAGAAATACACCATTGCTGGGTTAACACCTAAAGATACACGTCATATCACTTTCCCTATTTTGGACCAAGATGGCAAAAACCTCCCTGGAAGCAACTCTCTTCTTGCCTACTTTAAAGATAAATATGGCATCGATATTGAATACAAAGATATTCCTGCCTTGGATTTTGGGGGAAAAAAGACTAATTTCGTGCCTATGGAGCTATGTGTCTTGGTTGAGGGTCAGAGATTTCCCAAAGAGTATTTGGACAAGAATGCTGCCAAGAACTTGAAAAATATGTGCTTGGCTAGTCCAAAGGAGCGGGAATCTACAATACAAATGATGATGAAGTCTGGTGATGGACCTTGCGGCGGTGGTATTCTCAAGAATTTTGGAATGAATGTCAACACTTCCATGACAAATGTGACCGGACGCGTGATTGGACCTCCAGCATTGAAGTTAAGGGATCCACGTGGAAGAAGTACTTCTGCGAAACTGGATGCAGAGAAATGCCATTGGAATCTACTTGGAAAGTCAATGGTAGAAGGAAAACCTGTTGATTGTTGGGGCATCCTTGATTTTACCAGCAATGGACCTAATTGGTGCAAACTAAGAGGCAATCAGTTCGTTGATAATCTTATGGATAAGTACCGAAAGTTGGGCATTGTCATGGAGGAACCTGTTTGTTATGAGAATTCTACAATGCGAATACTTGGTGATTACAATTCACTTAGTGACTTgcttgaaaaaataaatgataaagttCAAAAAAACTGTCGACGGCGGCTGCAATTTCTTCTTTGTGTGATGGCCAACAGGGATCATGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATAGTGACACAGTGCTGCTTATCTGGTAGTGCTAATGAAGGGAAAGACCAATATCTCACAAATCTTGCTTTAAAAATCAATGCAAAAATTGGAGGCAGTAATGTAGAGCTCGTTAATAGTCTCCCACACTTTGAGAATGAAAGGGCTGTTATGTTTATAGGGGCTGATGTCAATCATCCAGGCTCTCGGGACATAGATAGTCCATCAATTGCTGCGGTGGTTGCCACTATTAACTGGCCCGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAGGAGCGTCGAATGgagaaaattttgaattttggagAAATTTGCTTTGACCTTGTTACATATTATGAGAAGTTGAACAAATCCAAACCCCAAAAAATTGTTATCTTTCGTGACGGTGTTAGTGAGAGTCAATTTGAGATGGTTCTTGGTCAGGAGTTGAAAGATTTGAAGACCGTTTTTCAGCGCTCGAATTACTTTCCAACTATCACTCTTATTGTAGCCCAAAAGCGACATCAAACTCGATTGTTTCCTACTGCTGCGAAGGAAGGGACTTCTAGTGGCAACGTATTCCCTGGAACAGTTGTGGACACAGAGGTCGTACATccttttgaatttgatttttaccTTTGTAGTCACTATGGAAGCCTAGGTACAAGCAAGCCCACTCACTATCATGTCTTATGGGATGAGCACAAGTTTACTTCTGATGAATTGCAGAAGCTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCCGACCTTGCTGCATATAGAGGAAGGCTATACTATGAAGCAAGGATGTCGACACAATCTCCAGATTCAGCTGTGTCTTCTTTATCATCACATTTAGCTTCTTCATCCATTTCTTCCGCCACCTCAATTTCAAATGATCCAGGGTTTTACAAGTTGCATCCTAATACGGAAAACATAATGTTTTTCGTCTGA 3078 0.4188 MERSGYRNKTGGRDGYGGGGRDGYGGGGRGGYGRGRSGYDGGGRSGYDGGGRSGYDGGGRSGNGGSGRGRGREREREFYPQHQPSPGGGGGGGRGFSQQSPNQWQPRPNPPSPFTHPSSSSVPPPFTTGNDNRQPEVKPHPRSDNGSPNLKEQKAETTTIGPIHRPDKGGTMSIRSCTLRVNHFPVTFNPQSIIMHYNVDVKATVPPKKGLPPKKISKFDLSMIRDQLFADHPQTLPLSKTAYDGEKSIFSAVPLPEETFTVEVSKGEDERVVSYTVTITLVNKLELRKLRDYLSGTVFSIPRDILHGMDLVVKENPARSTVALGRYFFPKNPPIVQRDLEPGIIAIGGFQHSLKTTAQGLSLCLDSSVLSFRKKMSVLDFLYDRIRGFNLAEFWKYKKAVEEELLGVKVNVTHRKTKQKYTIAGLTPKDTRHITFPILDQDGKNLPGSNSLLAYFKDKYGIDIEYKDIPALDFGGKKTNFVPMELCVLVEGQRFPKEYLDKNAAKNLKNMCLASPKERESTIQMMMKSGDGPCGGGILKNFGMNVNTSMTNVTGRVIGPPALKLRDPRGRSTSAKLDAEKCHWNLLGKSMVEGKPVDCWGILDFTSNGPNWCKLRGNQFVDNLMDKYRKLGIVMEEPVCYENSTMRILGDYNSLSDLLEKINDKVQKNCRRRLQFLLCVMANRDHGYKCLKWIAETKVGIVTQCCLSGSANEGKDQYLTNLALKINAKIGGSNVELVNSLPHFENERAVMFIGADVNHPGSRDIDSPSIAAVVATINWPAANRYAARVCAQERRMEKILNFGEICFDLVTYYEKLNKSKPQKIVIFRDGVSESQFEMVLGQELKDLKTVFQRSNYFPTITLIVAQKRHQTRLFPTAAKEGTSSGNVFPGTVVDTEVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEARMSTQSPDSAVSSLSSHLASSSISSATSISNDPGFYKLHPNTENIMFFV 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03192 1025 SMART DUF1785_2 322 375 IPR014811 -
Tsu02g03192 1025 ProSiteProfiles Piwi domain profile. 676 975 IPR003165 GO:0003676
Tsu02g03192 1025 SMART Piwi_a_2 676 975 IPR003165 GO:0003676
Tsu02g03192 1025 Pfam PAZ domain 396 503 IPR003100 GO:0005515
Tsu02g03192 1025 Pfam Argonaute linker 1 domain 324 374 IPR014811 -
Tsu02g03192 1025 MobiDBLite consensus disorder prediction 104 120 - -
Tsu02g03192 1025 Pfam N-terminal domain of argonaute 175 312 IPR032474 -
Tsu02g03192 1025 SUPERFAMILY PAZ domain 372 528 IPR036085 GO:0005515
Tsu02g03192 1025 Pfam Piwi domain 678 974 IPR003165 GO:0003676
Tsu02g03192 1025 MobiDBLite consensus disorder prediction 1 169 - -
Tsu02g03192 1025 MobiDBLite consensus disorder prediction 135 149 - -
Tsu02g03192 1025 Gene3D - 744 1025 IPR036397 GO:0003676
Tsu02g03192 1025 SMART PAZ_2_a_3 380 514 IPR003100 GO:0005515
Tsu02g03192 1025 ProSiteProfiles PAZ domain profile. 401 491 IPR003100 GO:0005515
Tsu02g03192 1025 Gene3D paz domain 371 495 - -
Tsu02g03192 1025 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 154 1024 - -
Tsu02g03192 1025 CDD Piwi_ago-like 538 974 IPR045246 -
Tsu02g03192 1025 CDD PAZ_argonaute_like 376 490 - -
Tsu02g03192 1025 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 154 1024 - -
Tsu02g03192 1025 SUPERFAMILY Ribonuclease H-like 660 975 IPR012337 -
Tsu02g03192 1025 Gene3D - 557 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03192 Tsu-Chr2 35615451 35620059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03192 152 979 Eukaryotic Initiation Factors Gene Family AT1G48410 34.910 1.56e-144 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03192 K11593 - gmx:100805250 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03192 02 35615451 35620059 Tsu04g03564 04 44775721 44778065 PCT