Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03186 ATGAAAGAGGGTAACAAGAAGCAAGGTGCAGCTTCACCATGTGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTCAAGATTGTGTTTTTGCTCCTTATTTCCCAGCTGATGAGCCACATAAGTTTGCTAATGTTCATAAAGTCTTTGGTGCTAGTAACGTCAACAAGATGCTTCAGGACTTACCTGAACATCAAAGAGGGGATGCAGTTAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGATCCTGTTTATGGTTGTGTAGGGGCAATTTCGTCACTTCAGCAACAAATTGATGTCCTACAAACACAATTGGCTGTGGCTCAAGCTGAGGCAGTACACCTAAGAGTGCGCCAAACTGCATCATCATTTTGGAACAGTTCAGGGCATAGCCCAACTAGTCCAACCTATAGTGGCTCTCCATCATCCAAGATCAATGAATCACAAGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGATGGGTATGGTGGTGATTCAATGTGGTGA 519 0.4355 MKEGNKKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSSGHSPTSPTYSGSPSSKINESQAKHIFDMDMVVDQDGYGGDSMW 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03186 172 Coils Coil 92 112 - -
Tsu02g03186 172 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Tsu02g03186 172 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Tsu02g03186 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 158 - -
Tsu02g03186 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 158 - -
Tsu02g03186 172 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03186 Tsu-Chr2 35539206 35545276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03186 1 172 AS2 family AT1G31320 69.143 1.82e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g03186 LOB 7.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03186 - - gmx:100802822 272.707