Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03183 ATGGAGTTCTCAGTTGAGGCGGTGGGAACCATAGAAAACTGTTTCGTATCCCTTCCCTTACCTCTAATCCAAACTCTTCAATCTACATCTTCATCTCCTCTTCCACCAATTCTCGTTCTTCAGCTTCGTTCTCCCATTCACCCTCCTCACTCCTGGTTCGTCGCTTGGTCCGGCGctacttcttcttcctcttcaactATACAAGTTTCTCAACAATTTGCTGAATGTGTTTCTTTACCGATTCATTCTCCAGTTCAAGTTAAAGTTGCTTCCAATGTTCCTCATGCTTCTTCTGTCTCTATAGAGCCAGATACTGAAGATGATTGGGAAATTTTGGAACTTAATTCTGAACAAGCTGAGAATCAAATTCTCAATCAGgttAGGATTGTTCATGAAGGGATGAGGTTTCCTTTACGGTTGAATGGTCACACTGTCATCACATTTCACGTTGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGAGGTTGCTCCAAAGACGCGCAAAAGGAATTTGGATTCAGCAGGAGATTCACATGTAGGTTCTAATAGTAGAGAGCATACTGCAAAGATGCTGCTCCGTTTACAAGAGCCAAATGATTTATGCCGTACCAGTACTCATATCAAAGGTGTTAAGCTTCATGTAGGCCTTACTTCGGTTGCTGTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTAACACACTTCAGTTGGTTTCCATAGTACCAAGAGTATCAAAAGAGAATGTTAATAACTCCAGAACCAAATCCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAGTTGAGAATGAAAATACTGACAAGAAGGAACATCGACAAGCAGTTGTGCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGTCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTACTTGAAGGCATGTGATATTATTTTGGAAAAGACTATCCCTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTAAGGCAGGAGAATGCTGTTGAGAAAGATGGTCTAGATGATTTTCACAGCCACAGGAATCACATTGATGAAAAATTGCATGGGAAAGCCACTTCAGGTGTCTTTTTGGATACCATAAATTGGTCAATGCACAGTGAAGTTGTTGCAGCTCTTTCTGATGAATCCAATTAcagagaagaggaagaggtCGTAAACCAATCTCAAAATCAAATGGGATTACAAAGTCTTGTACGACTATGGTATATTGCACAGCTTGAGGCAATTACTTCCATTACAGGGATGGAATTTAATTCATTGGTTATCGGTAGTAAAACCTTGCTCCATTTTGAATTAAGCTGTTGCAAGATTGGGAGTGATGAGAAGCTTCAGCTGACTTCTTCTGGAAACAGTGGCAAGGCAGCtgaaatgttatttttattgagCTTTGGCGAAGAAGATCTGCATCATGGAAAACTTAATGCATATGAAGTTTCACTTGGTGGCAGCCTCAATAACACCAACGTCGAGGATCTGAAGGTTTttgaaagaatgaaattggGTGATCCCATTTCTATTCATTCTTTGGACGAGAGAGCCTCTGCAGACCACATTCGTTCAAATGTACCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAataGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTCGTAATATATGGACCTCCGGGCTCTGGGAAAACTATACTAGCAACTAATGTGGCAATATCCCTTGAGAAGCATGAAGACATCTTAGCGCACATAATTTTTGTTTCCTGCTCAAAACTTGCTCTGGAGAAGGTCCCAGTTATTCGTCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTTATCTTTGATAATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGTTCTCAGCCATCAATGTCTGTTGCTGGACTCACGGATTTTCTAGTTGACATCATGGATGAGTATGGGGAGAAGAGGCGGAAGTCATGTGGATTTGGTCCAATAGCTTTCGTAGCTACCATACAGTCCCTAGACAGTATACCACAATCTTTGAGCTCTTCAGGTCGGTTTGACTTTCACATTAAGCTGCCTGCTCCAGCAGCTTCTGAACGCAAAGCTATGTTGAAGCATGTAATACAAAGGCGACACTTGCAATGCAATGAGAACATCCTGCATGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGCTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACCAGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTTGGCGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTCGGTGCTGCTGCCGCTGCATCTTCGCTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCTGCAGCACCGTGCCTActtttttttgatgaatttgattctATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACTGAGTTAGACGGTGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACAAGTAGACCGGATCTACTGGATGCAGCATTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCAATAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTGCAGCAGTTCATGATATTCTGGACAATATCGATACGTCTGGGTCAGATAAAACACCAGTTATTACTGATGCTCTTCTAAAGGTCACTGCATCGAAGACCAGACCATCTGTTTCAGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAATTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3387 0.4086 MEFSVEAVGTIENCFVSLPLPLIQTLQSTSSSPLPPILVLQLRSPIHPPHSWFVAWSGATSSSSSTIQVSQQFAECVSLPIHSPVQVKVASNVPHASSVSIEPDTEDDWEILELNSEQAENQILNQVRIVHEGMRFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVEVAPKTRKRNLDSAGDSHVGSNSREHTAKMLLRLQEPNDLCRTSTHIKGVKLHVGLTSVAVVHPETAKRFSFNTLQLVSIVPRVSKENVNNSRTKSNIMKAKGGSAVNEVENENTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDIILEKTIPSISLCPCRFKLRQENAVEKDGLDDFHSHRNHIDEKLHGKATSGVFLDTINWSMHSEVVAALSDESNYREEEEVVNQSQNQMGLQSLVRLWYIAQLEAITSITGMEFNSLVIGSKTLLHFELSCCKIGSDEKLQLTSSGNSGKAAEMLFLLSFGEEDLHHGKLNAYEVSLGGSLNNTNVEDLKVFERMKLGDPISIHSLDERASADHIRSNVPFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVVIYGPPGSGKTILATNVAISLEKHEDILAHIIFVSCSKLALEKVPVIRQELANHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTDFLVDIMDEYGEKRRKSCGFGPIAFVATIQSLDSIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRHLQCNENILHDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLPEDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAAIANMTEGFSGADLQALLSDAQLAAVHDILDNIDTSGSDKTPVITDALLKVTASKTRPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03183 1128 SUPERFAMILY ADC-like 10 88 IPR009010 -
Tsu02g03183 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 837 1098 IPR027417 -
Tsu02g03183 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 815 IPR027417 -
Tsu02g03183 1128 ProSitePatterns AAA-protein family signature. 975 993 IPR003960 GO:0005524|GO:0016887
Tsu02g03183 1128 Pfam Peroxisome biogenesis factor 1, N-terminal 98 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Tsu02g03183 1128 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Tsu02g03183 1128 CDD AAA 841 1004 - -
Tsu02g03183 1128 CDD AAA 583 734 - -
Tsu02g03183 1128 Gene3D - 93 174 - -
Tsu02g03183 1128 Gene3D - 1006 1085 - -
Tsu02g03183 1128 Gene3D - 552 736 IPR027417 -
Tsu02g03183 1128 Gene3D - 836 1098 IPR027417 -
Tsu02g03183 1128 Pfam AAA+ lid domain 1027 1065 IPR041569 -
Tsu02g03183 1128 SMART AAA_5 585 737 IPR003593 -
Tsu02g03183 1128 SMART AAA_5 871 1007 IPR003593 -
Tsu02g03183 1128 Pfam ATPase family associated with various cellular activities (AAA) 589 734 IPR003959 GO:0005524|GO:0016887
Tsu02g03183 1128 Pfam ATPase family associated with various cellular activities (AAA) 875 1002 IPR003959 GO:0005524|GO:0016887
Tsu02g03183 1128 Gene3D - 737 830 - -
Tsu02g03183 1128 PANTHER - 5 1125 - -
Tsu02g03183 1128 PANTHER AAA-FAMILY ATPASE 5 1125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03183 Tsu-Chr2 35512928 35526848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03183 586 792 Calmodulin-binding Proteins AT3G56690 28.365 1.41e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03183 K13338 - gmx:100803882 1799.64