Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03172 ATGCTGGGTGGTTTATACGGAGACCTACCTCCACCTTCTTCCGCCGAAGAAGAAAAACCAACCACCAATGTCTGGTCAAGTAGCACCAAAATGGCTCCAGCCACTCTCCGTAAACCCTCTTCTCTTTTCACACCTCCTCATACCCTTCTCAGATCCCAAAATAAACCTAAAATTACTAATCCCAAAACGGTTCTGTCTTCTGCACCACCTATACTTGCTCCGGCACTTGATGAGGTGATGCAACCGGCTTTGGTGGGCGTGCAGTCGACTGTGTTGGAGGAGTATGATCCTGCAAGGCCGAATGACTATGAGGAGTATcggagagagaagaagaggaaggcTAGGGAGGTGGAGATGATGAGGGAGTTGGAGAGACGGCGggaggaagaggaagagagggagagagaaagGGAGaaggaaagagagaaagaaagagaaagggaGAGAGATAGGGATCAGGGTGGTGATTCGAGGTTGAATATTTCGGGTGAGGAGGCGTGGAGGAGGCGTGTGGGGATGAGTAGCGGTGGTGGAGGTGGTGGGGCTGTGCCGAGGTCACCATCGCCTCCGGGGAATGTGGCTGGATTTACTATTGGGAAGTCGGAGACTGGTGGGTTAGGGGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAAGATGATGGCGAAGATGGGGTGGAAGGAAGGTCAAGGGCTTGGGAAACAGGAGCAAGGGATTACTACTCCGTTGATGGCGAAGAAAACCGATAGACGAGCTGGTGTTATTGTCAATGCCAGTGACAGTAAGGCTGATAAGAAAGTCAAGAGTGTTAACATCAATGGGGTACCTACCAGAGTGCTGCTACTTAGAAACATGGTGGGGCCTGGCGAGGTAGATGATGAGCTGGAAGACGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCAACGAAGCAGTGAGAATCTTTGTGCAGTTTGAGAGGTCTGAAGAAACAACTAAAGCACTTGTTGACCTTGATGGTCGATACTTCGGGGGTAGAGTAGTGCGTGCCACATTTTATGATGAGGATAAGTTTGGCAAGAATGAGCTAGCTCCGATGCCAGGAGAAATTCCTGGCTTCACTTAG 1152 0.467 MLGGLYGDLPPPSSAEEEKPTTNVWSSSTKMAPATLRKPSSLFTPPHTLLRSQNKPKITNPKTVLSSAPPILAPALDEVMQPALVGVQSTVLEEYDPARPNDYEEYRREKKRKAREVEMMRELERRREEEEEREREREKEREKERERERDRDQGGDSRLNISGEEAWRRRVGMSSGGGGGGAVPRSPSPPGNVAGFTIGKSETGGLGVGAGGQMTAAQKMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKADKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTNEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03172 383 Gene3D - 274 372 IPR012677 -
Tsu02g03172 383 Pfam G-patch domain 216 255 IPR000467 GO:0003676
Tsu02g03172 383 MobiDBLite consensus disorder prediction 97 165 - -
Tsu02g03172 383 PANTHER SPLICING FACTOR 45 SPF45 1 374 IPR040052 GO:0045292
Tsu02g03172 383 PIRSF SPF45 3 379 IPR040052 GO:0045292
Tsu02g03172 383 Coils Coil 103 153 - -
Tsu02g03172 383 SUPERFAMILY RNA-binding domain, RBD 280 366 IPR035979 GO:0003676
Tsu02g03172 383 ProSiteProfiles G-patch domain profile. 213 259 IPR000467 GO:0003676
Tsu02g03172 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 364 IPR000504 GO:0003723
Tsu02g03172 383 SMART G-patch_5 211 257 IPR000467 GO:0003676
Tsu02g03172 383 CDD RRM_UHM_SPF45 276 372 IPR034653 -
Tsu02g03172 383 MobiDBLite consensus disorder prediction 16 63 - -
Tsu02g03172 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 358 IPR000504 GO:0003723
Tsu02g03172 383 MobiDBLite consensus disorder prediction 1 63 - -
Tsu02g03172 383 SMART rrm2_1 279 360 IPR003954 GO:0003676
Tsu02g03172 383 MobiDBLite consensus disorder prediction 93 210 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03172 219 254 C2H2 Transcription Factor Family AT5G26610 58.333 4.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03172 K12840 - gmx:100800998 483.796