Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03160 atgttgtattttGAATCCCTTGTTCACAGTTCAAGTTCATGTTTGATTGAGTTTATTGTGGTTCAATATTTCTGGTGTTCTATTTTTGTTGCTTTTGAGTATGATTATGGTGTATTGCGATACACGATTTACCACTTTCTGACTTCGATGATGTTTAATTTGATGCAGGAAAttgataaaaagataaaatctcTTGATTACACAAGCTTTAGGGTAGAGGTTCTGAGTGCTGATGCTCAGCCTTCATATAATAGTGGGGTAATGGTTGTAGTGACTGGCTGCTTGACTGGAACTGACAATGTTAGACGCAAATTTGCTCAGTCCTTTTTCCTAGCTCCACAGGACAAGGGCTTCTATGTTTTGAATGATGTTTTTAGATATGTTGATGCGTATAAGTCTGTTGATATTGAGCCTGTACCAGCAAATGATGCTGATGAAAATGCTCCGTCAGAAGCTTTCACTCCAGATCCTGAACCTAACCATGTTGCTGAAGACATTCCACCCAGTCAACCTGTTATTGCTGATACTGACACTAACATCAGCAAAGAAGTGAGCTTACCTCTGGAGAATGGAAAACCATCAGTTACTGAAAATGTGATTCCAGTTAATCATGTTAAAGAGTCAAGTCACCGGGAACAACCCGCAAGCATTGAGAAAGTTCTTTCAAATACACAGGAGGATGCTCCCAAAAAGTCTTTTGCATCCATtGTGAATGCTTTGAAAGATAATTCTGCTCCCTTCCATTTAAGGACTTCTCCTGCAAAACCCGCTGTGAACCCACCTCGTGTACATAGCGTGCCTGCTCCTGAAGCACCAGCCCCTAACATGGACATTCCATTGGAAAGGAATAATGAGAATGGAGGTAGGGCTCATGCAATATTTGTTGCAAATTTGCCTATGACTGCAACAGTAGAGCAATTGGACCGGGTTTTCAAGAAATTCGGGCCCATTAAACGTGATGGTATTCAAGTTAGAAGTAACAAGGGATCTTGCTTTGGTTTTGTGGAATTTGAATCTGCCGCTTCGCTGCAAAGTGCCCTAGAGGCCTCTCCTCCTGTTATGTTGGACAACCGTAGGCTTTCCATTGAAGAAAGGCGAGGACGTGGTGGATACCGAAATGACAGAAATGATAACTTCAGGGGCCGTGGCAACTTTAGTGGCGGCCGTGGTGGTGGCTTTAACGGAAGGAACGATTTTGACAGGCGAAGCGAGTTCTCTGGCCGGCCTAGAGGAGGCAATAATACCGGTCGAAGCAATGGAGATGCTGCGCCAAGGAGTTATCAGAACGGAGGAGGAAAAGTCACTCGTCAACCACCAGTGAAGGCTCAGTGA 1332 0.4302 MLYFESLVHSSSSCLIEFIVVQYFWCSIFVAFEYDYGVLRYTIYHFLTSMMFNLMQEIDKKIKSLDYTSFRVEVLSADAQPSYNSGVMVVVTGCLTGTDNVRRKFAQSFFLAPQDKGFYVLNDVFRYVDAYKSVDIEPVPANDADENAPSEAFTPDPEPNHVAEDIPPSQPVIADTDTNISKEVSLPLENGKPSVTENVIPVNHVKESSHREQPASIEKVLSNTQEDAPKKSFASIVNALKDNSAPFHLRTSPAKPAVNPPRVHSVPAPEAPAPNMDIPLERNNENGGRAHAIFVANLPMTATVEQLDRVFKKFGPIKRDGIQVRSNKGSCFGFVEFESAASLQSALEASPPVMLDNRRLSIEERRGRGGYRNDRNDNFRGRGNFSGGRGGGFNGRNDFDRRSEFSGRPRGGNNTGRSNGDAAPRSYQNGGGKVTRQPPVKAQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03160 443 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 51 430 IPR039539 -
Tsu02g03160 443 MobiDBLite consensus disorder prediction 139 174 - -
Tsu02g03160 443 CDD NTF2 56 129 IPR018222 -
Tsu02g03160 443 SUPERFAMILY NTF2-like 45 128 IPR032710 -
Tsu02g03160 443 Pfam Nuclear transport factor 2 (NTF2) domain 53 127 IPR002075 -
Tsu02g03160 443 Gene3D - 279 425 IPR012677 -
Tsu02g03160 443 Gene3D - 42 132 - -
Tsu02g03160 443 SMART rrm1_1 292 363 IPR000504 GO:0003723
Tsu02g03160 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 360 IPR000504 GO:0003723
Tsu02g03160 443 SUPERFAMILY RNA-binding domain, RBD 284 396 IPR035979 GO:0003676
Tsu02g03160 443 CDD RRM_SF 293 363 - -
Tsu02g03160 443 ProSiteProfiles Nuclear transport factor 2 domain profile. 1 127 IPR018222 -
Tsu02g03160 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 367 IPR000504 GO:0003723
Tsu02g03160 443 MobiDBLite consensus disorder prediction 408 433 - -
Tsu02g03160 443 PANTHER BNAA02G14660D PROTEIN 51 430 - -
Tsu02g03160 443 MobiDBLite consensus disorder prediction 366 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03160 Tsu-Chr2 35267310 35269831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03160 293 382 Eukaryotic Initiation Factors Gene Family AT1G34140 30.435 7.95e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03160 K24983 - gmx:100805610 504.597