Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03142 ATGGAGGAGAGGCAGAGGAAGTTTGTGTGCAAGTATTGCTTAAAGAGATTTCCATGTGGAAAATCTCTTGGTGGTCACATCAGAACCCACATGACTGAAGAAAGAACTCATGCTGCTGCtattgctgctgctgctgccgctgataataataatactcGAATTttcaagagagattttgaaCCTGTTGCTGCTTTTAGTGATGGTGGAAATGGAAACCCTATTTATGGTCTTAGAGAGAATCCCAAGAAAACAATCAGGTTTGTTCATTCTCATAATCATGCTGCTGCTTCTGCCGCCGCTGCAACCACTGCATTGGAACATGAAATGATCAAATTCTGTAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTTTGCGGTCATATGGCTTCTCATTctgagaaagagaaaaagatcaACAAGTTTAATCAAATGGAGGATACTCAATCTGATGACACCGATGATGacgttgatgatgatgatgatagttgtGTTGTTGCTGCTTCAACAATGAATCTAAGGAAAAATAAGAGAAGAATTAGGTTCAAGTCTCTTACTCTTTCAAACCAACCTTCTTCTTCGTCTGTTAATGGTTCTTCATCTGTTTCAGAGATGGAACAGGAACAACAAGAGGTTGCTAGGTGTTTGATGTTATTGTCTAGAGATTTTTTTAGTCATAAGGGTCGTTTTGTTTCTGAATCTTCCCATAACAACTCGGTTCTTCTAGAGACAAAATCCAAGATTGTTATCAGAAATGGTAACAAACTTGTTTCTAGTAATGTTCATGGATTTGTTGAGGAGAAGAAGAAGCTGAAGTCTGTTGGTGGGATTGGTATTTCGATTAATTCGAATTCAAGAGATTTCAGATATGGTACAAAGAAGATCAAAATTGTAGATTCAAATGTTTCAAAATACCAATTCAAGAGGCcaaaaatggaagaagaagaagaagaacataaGTCTAGATTTGAGAATTGCAAAAGCAAATACAATGTAACAACTGTCATTAAGAAATCAGGGATGATTAATAAGGATTTGGATCATGATAGGAAGTTGgattcgcgaaagaaagcaaaatatgaaggattttattttaacaacaaaaatgaagaaatctATGACACTGGTAGAAAAAGTATGAAATATGAGTTCTTTAAGAGTGAAAAGGAAAAGGGTTGTTCTTATGATTCAATAACAGATGATGAGAGTGATGAACAAAAAAGTTCAGAAAGTGATTCTTTTCCTGCTGCAAAATCTCATAACAGTAAATCGGCGAATATAAAGAAATCAAGCAACAAGggtaaaaagaagaagaagttgaagtCAAAGAAAAGCAAGGAATATGAATGTCCAATTTGCTACAAAATTTTCAAGTCTGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGAACTGAAGAGAACACTTTTGTGATCAAACAAAGTGTTGCTCCTTGTTTGATTGATCTTAATCTACCTGCTCCTATTGATGAATAA 1509 0.3101 MEERQRKFVCKYCLKRFPCGKSLGGHIRTHMTEERTHAAAIAAAAAADNNNTRIFKRDFEPVAAFSDGGNGNPIYGLRENPKKTIRFVHSHNHAAASAAAATTALEHEMIKFCKECGKGFPSLKALCGHMASHSEKEKKINKFNQMEDTQSDDTDDDVDDDDDSCVVAASTMNLRKNKRRIRFKSLTLSNQPSSSSVNGSSSVSEMEQEQQEVARCLMLLSRDFFSHKGRFVSESSHNNSVLLETKSKIVIRNGNKLVSSNVHGFVEEKKKLKSVGGIGISINSNSRDFRYGTKKIKIVDSNVSKYQFKRPKMEEEEEEHKSRFENCKSKYNVTTVIKKSGMINKDLDHDRKLDSRKKAKYEGFYFNNKNEEIYDTGRKSMKYEFFKSEKEKGCSYDSITDDESDEQKSSESDSFPAAKSHNSKSANIKKSSNKGKKKKKLKSKKSKEYECPICYKIFKSGQALGGHKRSHFVGGTEENTFVIKQSVAPCLIDLNLPAPIDE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03142 502 ProSitePatterns Zinc finger C2H2 type domain signature. 451 471 IPR013087 -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 185 206 - -
Tsu02g03142 502 SMART c2h2final6 111 133 IPR013087 -
Tsu02g03142 502 SMART c2h2final6 449 471 IPR013087 -
Tsu02g03142 502 SMART c2h2final6 8 30 IPR013087 -
Tsu02g03142 502 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Tsu02g03142 502 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 502 - -
Tsu02g03142 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 413 429 - -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 139 160 - -
Tsu02g03142 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 430 444 - -
Tsu02g03142 502 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 502 - -
Tsu02g03142 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 449 471 IPR013087 -
Tsu02g03142 502 Gene3D Classic Zinc Finger 112 165 - -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 397 412 - -
Tsu02g03142 502 MobiDBLite consensus disorder prediction 397 444 - -
Tsu02g03142 502 SUPERFAMILY beta-beta-alpha zinc fingers 5 35 IPR036236 -
Tsu02g03142 502 Pfam C2H2-type zinc finger 113 135 - -
Tsu02g03142 502 Pfam C2H2-type zinc finger 8 32 - -
Tsu02g03142 502 Pfam C2H2-type zinc finger 449 471 - -
Tsu02g03142 502 SUPERFAMILY beta-beta-alpha zinc fingers 112 471 IPR036236 -
Tsu02g03142 502 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03142 Tsu-Chr2 35065327 35066835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03142 1 502 C2H2 Transcription Factor Family AT1G26610 38.704 4.77e-76 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g03142 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03142 - - mtr:MTR_4g082980 486.108