Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g03142 | ATGGAGGAGAGGCAGAGGAAGTTTGTGTGCAAGTATTGCTTAAAGAGATTTCCATGTGGAAAATCTCTTGGTGGTCACATCAGAACCCACATGACTGAAGAAAGAACTCATGCTGCTGCtattgctgctgctgctgccgctgataataataatactcGAATTttcaagagagattttgaaCCTGTTGCTGCTTTTAGTGATGGTGGAAATGGAAACCCTATTTATGGTCTTAGAGAGAATCCCAAGAAAACAATCAGGTTTGTTCATTCTCATAATCATGCTGCTGCTTCTGCCGCCGCTGCAACCACTGCATTGGAACATGAAATGATCAAATTCTGTAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTTTGCGGTCATATGGCTTCTCATTctgagaaagagaaaaagatcaACAAGTTTAATCAAATGGAGGATACTCAATCTGATGACACCGATGATGacgttgatgatgatgatgatagttgtGTTGTTGCTGCTTCAACAATGAATCTAAGGAAAAATAAGAGAAGAATTAGGTTCAAGTCTCTTACTCTTTCAAACCAACCTTCTTCTTCGTCTGTTAATGGTTCTTCATCTGTTTCAGAGATGGAACAGGAACAACAAGAGGTTGCTAGGTGTTTGATGTTATTGTCTAGAGATTTTTTTAGTCATAAGGGTCGTTTTGTTTCTGAATCTTCCCATAACAACTCGGTTCTTCTAGAGACAAAATCCAAGATTGTTATCAGAAATGGTAACAAACTTGTTTCTAGTAATGTTCATGGATTTGTTGAGGAGAAGAAGAAGCTGAAGTCTGTTGGTGGGATTGGTATTTCGATTAATTCGAATTCAAGAGATTTCAGATATGGTACAAAGAAGATCAAAATTGTAGATTCAAATGTTTCAAAATACCAATTCAAGAGGCcaaaaatggaagaagaagaagaagaacataaGTCTAGATTTGAGAATTGCAAAAGCAAATACAATGTAACAACTGTCATTAAGAAATCAGGGATGATTAATAAGGATTTGGATCATGATAGGAAGTTGgattcgcgaaagaaagcaaaatatgaaggattttattttaacaacaaaaatgaagaaatctATGACACTGGTAGAAAAAGTATGAAATATGAGTTCTTTAAGAGTGAAAAGGAAAAGGGTTGTTCTTATGATTCAATAACAGATGATGAGAGTGATGAACAAAAAAGTTCAGAAAGTGATTCTTTTCCTGCTGCAAAATCTCATAACAGTAAATCGGCGAATATAAAGAAATCAAGCAACAAGggtaaaaagaagaagaagttgaagtCAAAGAAAAGCAAGGAATATGAATGTCCAATTTGCTACAAAATTTTCAAGTCTGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGAACTGAAGAGAACACTTTTGTGATCAAACAAAGTGTTGCTCCTTGTTTGATTGATCTTAATCTACCTGCTCCTATTGATGAATAA | 1509 | 0.3101 | MEERQRKFVCKYCLKRFPCGKSLGGHIRTHMTEERTHAAAIAAAAAADNNNTRIFKRDFEPVAAFSDGGNGNPIYGLRENPKKTIRFVHSHNHAAASAAAATTALEHEMIKFCKECGKGFPSLKALCGHMASHSEKEKKINKFNQMEDTQSDDTDDDVDDDDDSCVVAASTMNLRKNKRRIRFKSLTLSNQPSSSSVNGSSSVSEMEQEQQEVARCLMLLSRDFFSHKGRFVSESSHNNSVLLETKSKIVIRNGNKLVSSNVHGFVEEKKKLKSVGGIGISINSNSRDFRYGTKKIKIVDSNVSKYQFKRPKMEEEEEEHKSRFENCKSKYNVTTVIKKSGMINKDLDHDRKLDSRKKAKYEGFYFNNKNEEIYDTGRKSMKYEFFKSEKEKGCSYDSITDDESDEQKSSESDSFPAAKSHNSKSANIKKSSNKGKKKKKLKSKKSKEYECPICYKIFKSGQALGGHKRSHFVGGTEENTFVIKQSVAPCLIDLNLPAPIDE | 502 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g03142 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 451 | 471 | IPR013087 | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 185 | 206 | - | - | |
Tsu02g03142 | 502 | SMART | c2h2final6 | 111 | 133 | IPR013087 | - | |
Tsu02g03142 | 502 | SMART | c2h2final6 | 449 | 471 | IPR013087 | - | |
Tsu02g03142 | 502 | SMART | c2h2final6 | 8 | 30 | IPR013087 | - | |
Tsu02g03142 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 10 | 30 | IPR013087 | - | |
Tsu02g03142 | 502 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 502 | - | - | |
Tsu02g03142 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 8 | 35 | IPR013087 | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 413 | 429 | - | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 139 | 160 | - | - | |
Tsu02g03142 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 111 | 138 | IPR013087 | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 430 | 444 | - | - | |
Tsu02g03142 | 502 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 502 | - | - | |
Tsu02g03142 | 502 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 449 | 471 | IPR013087 | - | |
Tsu02g03142 | 502 | Gene3D | Classic Zinc Finger | 112 | 165 | - | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 397 | 412 | - | - | |
Tsu02g03142 | 502 | MobiDBLite | consensus disorder prediction | 397 | 444 | - | - | |
Tsu02g03142 | 502 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 35 | IPR036236 | - | |
Tsu02g03142 | 502 | Pfam | C2H2-type zinc finger | 113 | 135 | - | - | |
Tsu02g03142 | 502 | Pfam | C2H2-type zinc finger | 8 | 32 | - | - | |
Tsu02g03142 | 502 | Pfam | C2H2-type zinc finger | 449 | 471 | - | - | |
Tsu02g03142 | 502 | SUPERFAMILY | beta-beta-alpha zinc fingers | 112 | 471 | IPR036236 | - | |
Tsu02g03142 | 502 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 113 | 133 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g03142 | Tsu-Chr2 | 35065327 | 35066835 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g03142 | 1 | 502 | C2H2 Transcription Factor Family | AT1G26610 | 38.704 | 4.77e-76 | 244 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tsu02g03142 | zf-C2H2_6 | 1e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g03142 | - | - | mtr:MTR_4g082980 | 486.108 |