Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03108 ATGGCTACTATCTTCTCTGGAGGTTCAGTCTCCCCCTTTCTTTTTCACAGCAACAAGGGCATGATATCATTTACACCCAAAAGTCCAATTCTTCATCTGAAGAGACCTATCTCTGCAAAATCAGTAGCTTCTATTGGAACTGAAACATCACTTTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTTAAGGATGAAGGTGTTATCACTGCAAAGACACCAGTGAAAGCTAGTGTTGTTCCAGAAGGTCTAGGATTGGTTGCACTCAAAGACATTTCTAGGAATGATGTTGTTTTACAGGTACCTAAAAGGCTGTGGATAAATCCAGATGCAGTTGAAGCTTCAGAGATTGGGAAAGTATGTAGTGAGTTGAAGCCATGGTTGTCTGTTATACTCTTTCTTATAAGAGAGAGGTCAAGGAGTGATTCTATTTGGAAACACTACTTTGGTATTCTGCCACAGGAAACTGATTCTACTATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTTAACACAACCCTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTTAAACTGGAAAAAGAAATCATTCTCCCTAATAAGCGGCTTTTTCCTTCTCCTGTAACACTGGACGACTTCTTCTGGGCATTTGGGATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTATAATTCCTTTTGCAGACTTGATTAACCACAGTGACAGAGTAACTACAACGGATCATGCTTATGAAGTTACAGGAGCAGCTGGTCTTTTCTCTTGGGATTACCTGTTTTCCATAAGGAGTCCCCTTTCTGTCAAAGCTGGAGAACAGGTATATATCCAATATGATTTAAACAAAAGCAATGCAGAGATGGCTTTGGACTATGGTTTCATTGAACCAAATGTAGATCGACATGCATACACCCTGACACTGGATATATCTGAGTCAGACCCTTTTTTCGATGACAAACTAGACGTTGCTGAGTCCAATGGTTTCGCTCAGACAGCATACTTTGATATCTTCTACAACCGTCCAATTCCACCAGGGCTGCTTCCGTATCTAAGACTAGTAGCGCTAGGTGGTACCGATGCTTTCTTATTGGAATCGTTATTCAGAGACTCAATATGGGGTCATCTTGAGTTGCCAGTGAGCCGTGACAATGAGGAACTATTGTGCAAAGCAGTTCGAGACGCCTGCAAATCCGCCCTTGCTGGTTATCATACAACCATTGAACAGGTATGA 1260 0.4159 MATIFSGGSVSPFLFHSNKGMISFTPKSPILHLKRPISAKSVASIGTETSLSPAVQTFWKWLKDEGVITAKTPVKASVVPEGLGLVALKDISRNDVVLQVPKRLWINPDAVEASEIGKVCSELKPWLSVILFLIRERSRSDSIWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKRLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVIIPFADLINHSDRVTTTDHAYEVTGAAGLFSWDYLFSIRSPLSVKAGEQVYIQYDLNKSNAEMALDYGFIEPNVDRHAYTLTLDISESDPFFDDKLDVAESNGFAQTAYFDIFYNRPIPPGLLPYLRLVALGGTDAFLLESLFRDSIWGHLELPVSRDNEELLCKAVRDACKSALAGYHTTIEQV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03108 419 CDD SET_RBCMT 66 304 IPR044431 GO:0016279|GO:0018022
Tsu02g03108 419 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 418 - -
Tsu02g03108 419 SUPERFAMILY SET domain 51 307 IPR046341 -
Tsu02g03108 419 Pfam Rubisco LSMT substrate-binding 321 418 IPR015353 -
Tsu02g03108 419 Gene3D - 305 419 IPR036464 -
Tsu02g03108 419 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 37 418 - -
Tsu02g03108 419 Gene3D set domain protein methyltransferase, domain 1 51 304 - -
Tsu02g03108 419 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Tsu02g03108 419 Pfam SET domain 82 288 IPR001214 GO:0005515
Tsu02g03108 419 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 312 418 IPR036464 -
Tsu02g03108 419 SMART set_7 72 295 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03108 Tsu-Chr2 34648750 34651469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03108 52 244 NAC Transcription Factor Family AT3G56570 29.208 3.26e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu02g03108 SET 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03108 K00592 - ag:AAA69903 754.592