Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03099 ATGGGTAGGTCACCTTGTTGTGAAAAAgttggattgaagaaaggtCCTTGGACTCCTGAAGAAGACCAAAAACTCATTGCTTATATTGAAGAATTTGGTCATGGAAGCTGGCGTGCATTACCTGCCAAAGCTGGGCTACAAAGATGTGGAAAGAGCTGTAGACTAAGATGGACTAACTACCTCCGACCTGACATAAAAAGAGGAAAGTTTAGCTTGCAGGAAGAACAAACCATTATTCAACTTCATGCCCTTCTTGGAAACAGATGGTCTGCCATAGCAGCTCAACTTCCAAGAAGAACAGATAACGAGATCAAGAACTATTGGAACACACACCTCAAAAAGAGGTTAACAAGAATGGGTATAGACCCTATTACTCATAAGCCAAAAACAGATCATACATCAGCTGGTAGTTCCACTTGCAGTCAGTACTCTAAAGACTCAGCTAACCTAAGTCACATGGCACAATGGGAAAGTGCTCGTTTAGAAGCTGAAGCAAGACTTGTtagagaaacaaataaaatgaaagttcAAAGACAACTCGAATTCGAATCGACAAGACCACAAGCTAGACTTTTTCTTAACAAAATCACACCACTTCAACAACCTTCACTTCCACCTTGTCTTGATATCCTTAAAGCATGGCAGAGTTCATGGTCTAAaccaacaccaacaacaacaccaacagCAAAAGATGAAGCAAACCACAAAATGCATAGCATGTATGCTATGATGTTATCTAATGATGAAAATCTTGAATCACCAACATCTACTTTGAATTTCCCTGGTACAACTCTGCTTCCTCTGCCTCTTCCTGTTGTTTCTGTTCCTATGACCAACAACATTAATGTTGTAGCATTCAATCAAAATTTACTTCCATTAACTGAAACCACcaataatgatgatgagatATGGAAACAATTCAATTTAACCAAACAGAACACAGAAGCTCATGATCATGGTCATGGTCATGGTCATGGTCATGATCATGATAACaatgtcaacaacaacaacatgcTAAACTTTCAGCAAGATGATGATATAATGGCAGCAGTGGAAGCATTTAGATCATGTGGTGGATATGACAATAATATTAACACCCCTCCAATTTCAACAAATGTTCTTCAAGCTCTTGAAAGTGGTGATGATGATCATGAAAATTTGGATGGAAACATGATGTGTAATGTGAATCTTGAAGAGAATAAGCATTATTGGAATAGTATACTTGGTTTGGTTAATGAATCTGATGACATGAACATTAATGTCCAATga 1269 0.3499 MGRSPCCEKVGLKKGPWTPEEDQKLIAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPRRTDNEIKNYWNTHLKKRLTRMGIDPITHKPKTDHTSAGSSTCSQYSKDSANLSHMAQWESARLEAEARLVRETNKMKVQRQLEFESTRPQARLFLNKITPLQQPSLPPCLDILKAWQSSWSKPTPTTTPTAKDEANHKMHSMYAMMLSNDENLESPTSTLNFPGTTLLPLPLPVVSVPMTNNINVVAFNQNLLPLTETTNNDDEIWKQFNLTKQNTEAHDHGHGHGHGHDHDNNVNNNNMLNFQQDDDIMAAVEAFRSCGGYDNNINTPPISTNVLQALESGDDDHENLDGNMMCNVNLEENKHYWNSILGLVNESDDMNINVQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03099 422 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g03099 422 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g03099 422 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu02g03099 422 CDD SANT 69 112 IPR001005 -
Tsu02g03099 422 CDD SANT 16 61 IPR001005 -
Tsu02g03099 422 SMART sant 13 63 IPR001005 -
Tsu02g03099 422 SMART sant 66 114 IPR001005 -
Tsu02g03099 422 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g03099 422 MobiDBLite consensus disorder prediction 123 144 - -
Tsu02g03099 422 Gene3D - 69 116 - -
Tsu02g03099 422 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu02g03099 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 414 - -
Tsu02g03099 422 MobiDBLite consensus disorder prediction 130 144 - -
Tsu02g03099 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g03099 422 Coils Coil 153 173 - -
Tsu02g03099 422 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 414 - -
Tsu02g03099 422 Gene3D - 13 66 - -
Tsu02g03099 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03099 Tsu-Chr2 34580090 34582094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03099 1 272 MYB Transcription Factor Family AT3G01140 58.333 2.30e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g03099 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03099 K09422 - gmx:100809025 442.195