Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03097 atggcaacaacaacaacaacagaagaagaagaacaagaagagtACTTGCAACAACTCAGATCCAAAGCAACAGAACTTTTCATCAGAGAAGAATGGAACGATTCAATCCAAACCTATTCCCAATTCATCACTCTCTGCACTCACCATCTCTCTCTTCCTCACTCTGACCCACAAAAGCTTCGCAAATCTCTCTGCATAGCCCTCTGCAATCGCGCCGAAGCAAAATCGAGATTACGTGATTTCAACTCTGCATTGCAAGATTGTGATCATGCTTTACAAGTTGATGCTACCCATTTCAAAACCCTAGTTTGTAAAGGTAAGATTTTGCTTTCTCTTAATAGATATTCAATGGCACTTCATTGTTTTAAAATAGCTCTGCTTGATCCTCAAGCTAGTGGCAACTCTGAATTTCTTGTTGggtattttgaaaaatgtaaaaagtttgaatttttatcaAGGACTGGGAATTTGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAACTTGCTGAGTATATTGGTGCTATTGAGATTAGAAAATCGGAAATTAGTGGGCGTGGTGTTTTCGCTACGAAGAATATTGATGCCGGGTCTTTGATTTTGGTTACTAAGGCAATTGCAATAGAGAGGAGTATATTGGTAGGTAAAGATTTGAGTGAGGATACACAATTAGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGACTTTGTTAGAAAATGTCATAAGACTAGGGATTTGATTGGTAAATTGTCAATTGGGGAAAATGAGGATGAACTTGATGTTCCTGATGTTGAACTCTTTAGGCCTGAGAGTATTGGTGAAATGCATTCAAGTGATGATATTGATGTTGATATGGTTAAGTTATTGGCTATATTGGATGTTAATTCTCTAACTGAGGATGCAGTTTCGGCCAATGTTTTGAGGAAGAACAATGATTGTTATGGTGTTGGGCTATGGTTGCTTCCTTCATTCATCAATCATTCTTGTTGTCCTAATGCAAGGCGATTGCATGTTGGAGATTATTTGATAGTTCATGCTTCGAGAGATTTGAAAGCCGGTGAAGAGATAACTTTGGCCTATCTTGATCCACTTATTCCCTTGAACAAGAGAAAAGAGATGTCTATGACATGGGGGATTCATTGTAAGTGTAAGAGGTGCAAGTTTGAAGGGGAAATCTTGTTCTCCAAGCAAGAGATGAAGGAGATTGAGATTGGTATTGAAAGAGGGATGGATGTGGGTGGTTTGGTGTATAAACTTGAGGAACAGATGAAGAGATGGAAGGTTAGGGGGAAAGAGAAGGGATACTTGAGGGCTTCATTTTGGTCTTTATATTCGGAGGCTTACGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGGATTCCAGCATTGGATGCAGTGGTTGATAGTATCACAGATGTAGTAGGAGGTGATCACAGGGTGCTTAAGATTTTGATGGaggaattgaagaaaaaaggcGGTGGTAGTGGTGGCGGAAATTTGGAGATGGAGAAAGTTTTCAAGTTAGCAAGAGAAGTGTATGGAAAGGTAGTGAAAAAGCAAGCAATGAGGACACTGCTTGAGCTATGCATTGCTGAttga 1620 0.3753 MATTTTTEEEEQEEYLQQLRSKATELFIREEWNDSIQTYSQFITLCTHHLSLPHSDPQKLRKSLCIALCNRAEAKSRLRDFNSALQDCDHALQVDATHFKTLVCKGKILLSLNRYSMALHCFKIALLDPQASGNSEFLVGYFEKCKKFEFLSRTGNLDLSDWVLNGFPGKAPELAEYIGAIEIRKSEISGRGVFATKNIDAGSLILVTKAIAIERSILVGKDLSEDTQLVMWKNFIDKVVDFVRKCHKTRDLIGKLSIGENEDELDVPDVELFRPESIGEMHSSDDIDVDMVKLLAILDVNSLTEDAVSANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASRDLKAGEEITLAYLDPLIPLNKRKEMSMTWGIHCKCKRCKFEGEILFSKQEMKEIEIGIERGMDVGGLVYKLEEQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKKKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELCIAD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03097 539 Gene3D SET domain 287 397 IPR046341 -
Tsu02g03097 539 SUPERFAMILY SET domain 180 393 IPR046341 -
Tsu02g03097 539 CDD SET_SMYD 295 392 - -
Tsu02g03097 539 SMART set_7 179 373 IPR001214 GO:0005515
Tsu02g03097 539 Pfam SET domain 190 366 IPR001214 GO:0005515
Tsu02g03097 539 Gene3D Tetratricopeptide repeat domain 9 146 IPR011990 GO:0005515
Tsu02g03097 539 ProSiteProfiles SET domain profile. 179 367 IPR001214 GO:0005515
Tsu02g03097 539 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 5 528 - -
Tsu02g03097 539 SUPERFAMILY TPR-like 12 126 IPR011990 GO:0005515
Tsu02g03097 539 Gene3D SET domain 179 274 IPR046341 -
Tsu02g03097 539 SMART tpr_5 99 131 IPR019734 GO:0005515
Tsu02g03097 539 SMART tpr_5 16 49 IPR019734 GO:0005515
Tsu02g03097 539 SMART tpr_5 65 98 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu02g03097 SET 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03097 - - mtr:MTR_4g082140 937.176