Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03096 ATGGAGAGTAATACAAGCTCTGAACTCCCTCCTGGTTTTAGATTTCACCCAACAGATGAGGAACTAATTGTGCATTATCTTTGTAATCAAGCTACTTCAAAGCCTTGCCCTGCATCTATCATTCCTGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCtgATAAATCTGAGTTCGAAGAGAATGAATGGTATTTCTTTAGCCCAAGAGAAAGAAAGTACCCAAATGGGGTAAGGCCTAATAGAGCAACTTCATCTGGATATTGGAAAGCTACTGGTACAGACAAGGCAATCAATAGTGGATCAAAGCAAATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGTAGGCCACCAAAGGGTATCAAAACTAATTGGATTATGCATGAGTACAGATTGATTGGATCTCAAAAACAAACTAGCAAGCATATTGGATCCATGAGACTAGATGACTGGGTTTTGTGCAGAATCTATAAGAAAAAACACTCGGGAAAAACATTGCAACAAAAGGAGGAGTATTCAACACTTCAATTTAATGATTCTACAATAGCAAATCATGATGGTGAACAAGAAATTATGAACATGAACCTTCCAAGGACTTATTCCCTTACCTATCTGTTGGATATGAATCATTTTGGTCCAATCTTATCTGATGGTTCAACCTTTGATTTTCAAATACACAATTCAAATATTGGAATAGACCCTTTTGTAAAATCTCAGCCGGTTGAAATGAATAACTATTATGAACCAGATTCACAGAGTAGCAACATCACCAATCAACCAATATTTGTGAAGCAAATGCATAATTATTTAGGATAA 822 0.3601 MESNTSSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFEENEWYFFSPRERKYPNGVRPNRATSSGYWKATGTDKAINSGSKQIGVKKSLVFYKGRPPKGIKTNWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHSGKTLQQKEEYSTLQFNDSTIANHDGEQEIMNMNLPRTYSLTYLLDMNHFGPILSDGSTFDFQIHNSNIGIDPFVKSQPVEMNNYYEPDSQSSNITNQPIFVKQMHNYLG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03096 273 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Tsu02g03096 273 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Tsu02g03096 273 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Tsu02g03096 273 PANTHER BNAC06G30680D PROTEIN 1 232 - -
Tsu02g03096 273 PANTHER NAC TRANSCRIPTION FACTOR 56 1 232 - -
Tsu02g03096 273 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03096 Tsu-Chr2 34536841 34539362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03096 1 224 NAC Transcription Factor Family AT1G69490 65.532 7.47e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g03096 NAM 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03096 - - gmx:100785110 413.69