Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03091 atgaaagcatGGCCATCAATgcaatcttcttcttcaactagTTATTCTTCTCCATCAATGGGAATGGTCTATGCAAACATGGACTCTCTATCACTTAACTATGctgctgcttcttcttcttcatctcaaGATTTCTATGTCTCAAAGGAAGGTACTAACACTAACACTACTACTGCTAACTGGTCTTTACCATTTATGAGGGAATGTTGTATTACAAGAAACTATGAGGAAAACCAAAACAGTGATGAAGTTGGAGAAGGTAATGGTTCTGATTCTGGTGATGGTGTTGGAGAAAACAACAGTGACAAAATTAACCCTAATGAGAATAATTATGTCAGTGGCAAAGAGGTAATAGATACTGGACATTCTAAACTATGTGCAAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAATTGGAATCTCATAGCTGAAAAGCTAGATGGAAGATCAGGTAAGAGTTGTAGGCTTAGATGGTTCAACCAATTGGATCCAAGGATTAATAGGAGAGCTTTTagtgaagaagaggaagaaagaTTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATTGCTAGACTTTTTCCTGGAAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCAAGTGCTTACAGAAGAAGGAGGCTGAATCAATCTGTTTACAGAAGAATAGAAGATAATGCAAATTTTGTCTCACAAGGGATTGAACAAGTACCATCACAATATTGTATTAACCTCCCAAATGGAACACTTGGTTATAATAACATGCCTAGTTTCCCATTTTCATCTTTCCATGGAGTAATTGATGGTGGTGTTGATTGTAGCTTAAATGGTTCAGCTCATTTTTCTGGTAGCAAAGAATCAATCTCAAGTAACAAACAGACCCTTAGTAGTCCTTTTGGCTTATTTGCTCAACAGACACCACTTGATTTCATTTCTGGAGGTATAAGAAATGATGATTATAGCCAAATGAAAAACTGGGATAGGCCAAGTAATTTACATAATCATCAACCAACCAGTTTTTACCATCAATATCCCCAAtatatgatgcaaatgcaacaacaaaacaacaatttttacaGTTTCACATCAAATTCAACCACAGCAGCAACATCAACAACACAAATATTAGGCAGTGAAATTTCACTATCATCAGTGGTAACAGCAACAGAAAATCACAGAGATCAAGTTATGATGATGAGTAATCCACCTCCTTCTTCAGATACAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAACATGA 1344 0.3363 MKAWPSMQSSSSTSYSSPSMGMVYANMDSLSLNYAAASSSSSQDFYVSKEGTNTNTTTANWSLPFMRECCITRNYEENQNSDEVGEGNGSDSGDGVGENNSDKINPNENNYVSGKEVIDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNANFVSQGIEQVPSQYCINLPNGTLGYNNMPSFPFSSFHGVIDGGVDCSLNGSAHFSGSKESISSNKQTLSSPFGLFAQQTPLDFISGGIRNDDYSQMKNWDRPSNLHNHQPTSFYHQYPQYMMQMQQQNNNFYSFTSNSTTAATSTTQILGSEISLSSVVTATENHRDQVMMMSNPPPSSDTIPFIDFLGVGATT 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03091 447 Gene3D - 181 250 - -
Tsu02g03091 447 PANTHER MYB PROTEIN-RELATED 20 446 - -
Tsu02g03091 447 CDD SANT 131 172 IPR001005 -
Tsu02g03091 447 CDD SANT 182 222 IPR001005 -
Tsu02g03091 447 ProSiteProfiles Myb-like domain profile. 175 225 IPR001005 -
Tsu02g03091 447 Gene3D - 128 179 - -
Tsu02g03091 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 174 IPR017930 -
Tsu02g03091 447 Pfam Myb-like DNA-binding domain 180 223 IPR001005 -
Tsu02g03091 447 Pfam Myb-like DNA-binding domain 128 174 IPR001005 -
Tsu02g03091 447 PANTHER MYB TRANSCRIPTION FACTOR 20 446 - -
Tsu02g03091 447 ProSiteProfiles Myb-like domain profile. 128 174 IPR001005 -
Tsu02g03091 447 SUPERFAMILY Homeodomain-like 128 221 IPR009057 -
Tsu02g03091 447 SMART sant 179 227 IPR001005 -
Tsu02g03091 447 SMART sant 127 176 IPR001005 -
Tsu02g03091 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 229 IPR017930 -
Tsu02g03091 447 MobiDBLite consensus disorder prediction 77 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03091 Tsu-Chr2 34388908 34390995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03091 102 255 MYB Transcription Factor Family AT1G69560 71.429 2.68e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g03091 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03091 K09422 - gmx:100804537 398.282