Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03087 ATGGATCAGCAAAACCAAAGTATGCGTTTGGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCATGAACTTCACCAAAGATTTTCTGAAGCAATTAACCAGCTTGGAGGTGCAGAAAAGGCTACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTCACTTTATACCATCTCAAGAGTCACTTACAGAAATATAGACTTGGCAAAAGCCAACAGGTAGAAACATGTTCTGACAACAAACAAGATTATATAGAAATCCAAAGCAGTGGTAGTCAATGCAGCAGAGAAATTAGTGTTGGAAACCAGAATCAAACGACTGAAAGCTTGAAGATTTCTGAGGCTCTCCAAATACAAATGGAAGTACAAAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATTGAAGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAAGAAGCACTTGCAGGACACGGTTCTTCTTCGACAACGGGTGTAGAACATGCTAAAGATGAACTTTCTCAGTTAttatcaataatcaacaatGCATGTCCTAGTTCTCCTATTTCAGAACTAACAGAAACAAGAGGTTTAAGTTTAAACTTTGGTGAGAGGAAACAAAATAGAGGAACTATGTGTTCTCTAGAAAGTTCTCTTACATCATCTGAAAGCTCTGAGAGAAAAGAGGAAAATCAAACGATAAATGAGGCAGAGAACACTCCAAATTATAATAGTATTACAGTTGAATTGCCACTAATTTCCATTGAAACAGAAAGTAAAACCTTCAGGAATGATACTAATAATGAAGCTAGTGGGAAAAAGAGAAGTCCAACTACTGATTTTGATGGTGGCTATGTTGATCGATCGGATGGAAAAAGATGTGGCAAAAAATCGAGGAAATCTGAGTTGTCACAAATGCTTGACTTGAACATAAAATATGAGAGAGACATTGACTTAAGTTCCTCAGAAATAGATTTAAATTGTAGTTCAAGCTTTTAA 1017 0.3638 MDQQNQSMRLVLSTDAKPRLKWTHELHQRFSEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQVETCSDNKQDYIEIQSSGSQCSREISVGNQNQTTESLKISEALQIQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGHGSSSTTGVEHAKDELSQLLSIINNACPSSPISELTETRGLSLNFGERKQNRGTMCSLESSLTSSESSERKEENQTINEAENTPNYNSITVELPLISIETESKTFRNDTNNEASGKKRSPTTDFDGGYVDRSDGKRCGKKSRKSELSQMLDLNIKYERDIDLSSSEIDLNCSSSF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03087 338 Pfam MYB-CC type transfactor, LHEQLE motif 114 159 IPR025756 -
Tsu02g03087 338 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Tsu02g03087 338 MobiDBLite consensus disorder prediction 265 280 - -
Tsu02g03087 338 MobiDBLite consensus disorder prediction 291 306 - -
Tsu02g03087 338 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Tsu02g03087 338 MobiDBLite consensus disorder prediction 215 248 - -
Tsu02g03087 338 Gene3D - 16 74 - -
Tsu02g03087 338 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 338 - -
Tsu02g03087 338 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Tsu02g03087 338 MobiDBLite consensus disorder prediction 265 306 - -
Tsu02g03087 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 338 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03087 Tsu-Chr2 34332899 34334781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03087 1 282 G2-like Transcription Factor Family AT1G69580 49.495 3.57e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g03087 Myb_DNA-binding 6.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03087 - - gmx:100805252 440.269