Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03074 ATGGCTTTGACGATGAGGGCGGCAGCGGCAGCTCCCCGCAGTTTAGGCCGACTTTTCTGCACCAACCCAACCGCTTCTTCTCCCACTTTCCCTTTCACTTCAACGCTGCCTTCCGGAGCTACTTCCACTCGAGCGATGGCGGATCCCAGCACCAACCTCTTCGTCTCCGGGCTTAACAAACGTACTACAACAGAGAATCTGAGGGAAGCATTTCAAAAGTTTGGTGAAGTTGTTCATGCTAGGGTGATAACTGATCGAGTCTCAGGGTACTCTAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGATGCTGCTAAGGGCATCGAAGGCATGGATGGAAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCTGGAGAAGCTGCAAATAATACGACTAAACAATATGGCCGACCTTACTAA 447 0.4899 MALTMRAAAAAPRSLGRLFCTNPTASSPTFPFTSTLPSGATSTRAMADPSTNLFVSGLNKRTTTENLREAFQKFGEVVHARVITDRVSGYSKGFGFVQYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAANNTTKQYGRPY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03074 148 Gene3D - 38 148 IPR012677 -
Tsu02g03074 148 PANTHER TRANSFORMER-2-RELATED 1 146 - -
Tsu02g03074 148 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 146 - -
Tsu02g03074 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Tsu02g03074 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Tsu02g03074 148 SMART rrm1_1 52 125 IPR000504 GO:0003723
Tsu02g03074 148 SUPERFAMILY RNA-binding domain, RBD 36 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03074 Tsu-Chr2 34102944 34106210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03074 24 131 Eukaryotic Initiation Factors Gene Family AT4G34110 34.259 1.51e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03074 - - gmx:100784609 210.69