Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03068 ATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGTAAATCAGAACCATCAGATGTACATGATCCACAAACAAGGAAACATTTGAGTACAATCTTAACAAAAAAAGGAGGAAGATCAGGTTGTTCAAGGTCAATAGCAAATCTAAAAGATGTTATTCATGGAAGTAAAAGACATATTGAAAAGCCACCAAGTTGTAGTCCAAGATCTATAGGTAGTAGTGAATTTCTCAACCCAATAACTCATGAAGTTATTTTGAGTAACTCAAGGTGTGAGTTAAAAATCACTGGTTTTCAAGAAGGTGTTGGAAATGGTGGTAATAATGGTAGTGGTAGTAGTAGTAGTGGTGGTTCTTCAACTTTTGTTGGTACTTTAAGACCTGGTACACCTGGTCCTGGAGGACACCCTACAATGCATTACTTTAATCCTTCTTTTAGGACTTCTTCAACTCCACCAAGAAAATCTCCTTTTCTTTTGTCAGAAGGGTCTGGTTTtcatggtggtggtggtggtggtggtgttcaTTCAAGTAATAGGATGTCCCTTGAGACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCACCATCTCTCCAAACATGCTGTTACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATAATATGCAGGACAAGTTGGTTAAAGTCAGAAAACAACTGTGGTAGAATTGAAAGAGTTTTGAAGGTACACAATATGCAAAAAACTTTAGCTAGATTTGAAGAATACAGGGAAATGGTGAAAATCAAAGCAAGTAAACTCCAGAAGAAGCATCCTAGGTGCTTAGCTGATGGAAATGAGCTTTTAAGGTTCTATGGAACCACTGTTGCTTGTTCTCTTGGTCTCAATGGTTCTTCAAGTCTATGCCTATCAGAAAAATGTTGTGTTTGTAGAATTATTAGGAGTGGTTTTTCTGCTAAGAAGGAGTTGAAAGGTGGCATAGGTGTTTTTACAACATCTACAAGTGGAAGAGCTTTTGAATCTATAGAGATTTTAGATAATGAACCATCATTTAGAAAGGCATTGATAGTATGCAGAGTAATTGCTGGTAGGGTTCATAGGCCACTTGAGAACATTCAAGAAATGGCAGCACAAACTGGATTTGATTCATTGGCTGGAAAAGTAGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTTAATCCTAGAGCTCTTCTTCCTTGTTTTGTGGTAATTTGCAAACCATGA 1284 0.3614 MPTVWFSLKKSLHCKSEPSDVHDPQTRKHLSTILTKKGGRSGCSRSIANLKDVIHGSKRHIEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGVGNGGNNGSGSSSSGGSSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSGFHGGGGGGGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENNCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRSGFSAKKELKGGIGVFTTSTSGRAFESIEILDNEPSFRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03068 427 Gene3D - 208 426 - -
Tsu02g03068 427 PANTHER - 2 427 - -
Tsu02g03068 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 427 - -
Tsu02g03068 427 MobiDBLite consensus disorder prediction 102 155 - -
Tsu02g03068 427 ProSitePatterns Zinc finger C2H2 type domain signature. 195 216 IPR013087 -
Tsu02g03068 427 SUPERFAMILY ADP-ribosylation 218 426 - -
Tsu02g03068 427 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03068 Tsu-Chr2 33998583 34001450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03068 1 427 C2H2 Transcription Factor Family AT5G54630 69.762 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g03068 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03068 - - gmx:100787790 734.561