Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03062 ATGAACATGGTTAGGTTTATTGAATTGGGCTCGATTTTGGAGCCTGGAAGGCCTGCGAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTGCGAATGGTGACACAGTTAAGGGGTGAGGCCCAAAAGCTTAAAGATGCTAATATGGGTCttcaagaaaaaattaaagagttaaAGGTTGAAAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAATTGGAGCAGCAGCTGAAATCTATCAATGCACAACCTAGTTTCTTGCCTGCCCCCCCTACTGCACTACCTACTGCACTCCCCGCTGCCTTTGCTGCGCAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTCTTGGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTACTTCGTCCTCCAGTTGCCTAA 459 0.4597 MNMVRFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANMGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSINAQPSFLPAPPTALPTALPAAFAAQGQAHGNKLVPFLGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03062 152 Coils Coil 34 89 - -
Tsu02g03062 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 57 IPR036638 GO:0046983
Tsu02g03062 152 Gene3D - 27 89 - -
Tsu02g03062 152 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 5 152 - -
Tsu02g03062 152 PANTHER BHLH TRANSCRIPTION FACTOR 5 152 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03062 Tsu-Chr2 33933317 33937862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03062 5 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 79.333 1.49e-80 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03062 - - gmx:100788858 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04547 02 54472939 54475566 Tsu02g03062 02 33933317 33937862 PCT