Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03060 ATGGTAGGAATTGGGAAGACAACCCTTGCTAttcttttatatgaaaaaatctCTGTTCAATTTGGGGACTGCTGTTTTATTGATGATACAAGCAAAATTTATGAACGTGATGGTCCGATTGGTGTACAAAAGCAAATTCTGCATCAAATTTTAGGCGAAGAATACTATCTTTATGACGAAAGTGAATTGATACTAAGTAGTCTGTGTCAATATAGGGTTCTTATAGTTTTAGATAATGTTGATCATAGTGCACAATTGGGGAAACTTGCTTTAAATCGTATGTTGCTACCGCTAGGGAGTAGAATTATTATAGTTAGTAGAGATGCTCATATCTTGAAAGAGTATGGAGTGGATGCACTTTACAAAGTTCCACTCTTAAATGAGAGCGACTCTCTTCTATTATTTTGTCTAAAGGCTTTCAAACATGATGAGATTGTTAGTAACTATGAGAAGTTGACATATGATATATTAAAGTATGCTAATGGCCTACCACTAGCAATTAAAGTGCTGGGTTTATTTTTGTTCGGTCGAAGTATCTCTGAGTGGAGATCTGAATTCGATAAATTGGATAAACTGGGAAAAATCCCAAACATACATATTATGGATACGCTGCAGTTTAGTTTAATTGGGCtagaggaaaaggaaaaagaacTATTTCTTCATATTGCTTGCTTTTTCAATGGGCGAGAGGAGGATTATGTTAAAAATGTTCTGAATTGTTGTGGATTTCATGCTGATTTTGGTTTAGCTGTTCTGATTGATAAATCACTCATAAGCATTTCAGATGAATGTCAGATTGAAATGCATCCTTTGTTGAAAGTGCTAGGCAAACAAATTGCTCATGACAATTCAAGAAAGTGGAGCAGATTGTTTCTGCACGAACAATTCTACAATGTTGTGTCTGAGAATATGGAAAACAACGTTGATGCCGTAGTTTTGTATGGATCtgaaagggaaaagggaaaatTGATGGCTGAAACATTGTCAAAATTGAATAGTCTTAGACTGCTCATACTCAAGGAAGTTAGATTTTTAGGAAGCCTGAATTGTCTTTCTAATGAATTAAGATATGTTGAATGGGATGAATATCCTTTCTTGGATTTGCCATCAAGTTTTCAGCCCAATCAACTTGTTGCATTGATCTTGGTGGATAGCAGCATCCAACAACTCTGGTTTGACACAGAGAAACTGCCCAATTTGACAACTCTGGATCTAAGCTACTCTGAAAATCTGACCAAGATGCCAGATTTTGGAGAGTTCCCAAATCTTAAGCGGCTAAATCTTGAAGGATGTGGTAAACTTGTGCAGATAGCGTCATCTATTGGTCTTCTAAGAAAGCTTGGTTTCTTGAATTTGAAGAATTGTGAAAACCTTATATGCATACCCAACGAAATATCTGGTCTCACCGCTCttaaatatttaaatctttGTGGCTGTTCCAAAGCGTTTAACAATCCCAAAGCACGTGAAGATTTTTCTAGTTGTGTGTTGCCTTCCTTGCCTAGTTTCTCTTGTTTGAATGAACTGGATATCAGTTTTTGCAGACTTGGCCAAATCCCTGACGCTCTTGGATGTCTAATTTGGTTAGAACGATTAAATTTGAGGGGAAACAATTTTGTCACATTGCCTACCCTCCAGGATCTTTCCAAACTTGAATACCTAAATTTGGAGCATTGCAAGCAGTTGACCTCTTTGCCTGAGCTCCCTTCACCTGTCGCTATCAAGAAGGATAAACATAGGAGAGTAGGAATGTATATTTTCAACTGTCCTGAATTGGGTGAGAGGGAACATTGCACTAGCATGACTTTTTCATGGATGACAAATTTCATTCAAGCAAATCAAAATTCTTGTGACTCCTTTCATCAGATTGATATTGTTATTCCTGGAAGTGAAATTCCAAGTTGGTTCAACAATTGGAAAATGGGTAGATCAATAAGCATAGACCCATCTCCGATTGTGTATGACGATAATATCATTGGCATTGCTTGCTGTGCCGTATTTTCTGTGGAACCTTTTGATCCAAGTAAGGCAAGATATGAATGGGGACCTGTAGTACGGTTAGGTTTTAAGAGCAGCAATGCTGCCAACTGCAATTATGTTGTCATTCCAGTAACTCTGTATAGAAATCTTGTTACGGTCAAATCAAATCACCTGTGGCTAATCTATTTTGATCGGGAATTATTCTTCAGTTTTCTGAGATCTATAGACAATACACTATGGGAACTTGATCATATCGTAATGGAAGCTTCCGTTACGAATGGCCAAGGCTTGCATCTGGAGAATGAGGAAACTCTTGTGCTCCAACCTACAACTCTTATGGTGATTGAAGATGAGGCACAGCTGCAATAG 2349 0.3665 MVGIGKTTLAILLYEKISVQFGDCCFIDDTSKIYERDGPIGVQKQILHQILGEEYYLYDESELILSSLCQYRVLIVLDNVDHSAQLGKLALNRMLLPLGSRIIIVSRDAHILKEYGVDALYKVPLLNESDSLLLFCLKAFKHDEIVSNYEKLTYDILKYANGLPLAIKVLGLFLFGRSISEWRSEFDKLDKLGKIPNIHIMDTLQFSLIGLEEKEKELFLHIACFFNGREEDYVKNVLNCCGFHADFGLAVLIDKSLISISDECQIEMHPLLKVLGKQIAHDNSRKWSRLFLHEQFYNVVSENMENNVDAVVLYGSEREKGKLMAETLSKLNSLRLLILKEVRFLGSLNCLSNELRYVEWDEYPFLDLPSSFQPNQLVALILVDSSIQQLWFDTEKLPNLTTLDLSYSENLTKMPDFGEFPNLKRLNLEGCGKLVQIASSIGLLRKLGFLNLKNCENLICIPNEISGLTALKYLNLCGCSKAFNNPKAREDFSSCVLPSLPSFSCLNELDISFCRLGQIPDALGCLIWLERLNLRGNNFVTLPTLQDLSKLEYLNLEHCKQLTSLPELPSPVAIKKDKHRRVGMYIFNCPELGEREHCTSMTFSWMTNFIQANQNSCDSFHQIDIVIPGSEIPSWFNNWKMGRSISIDPSPIVYDDNIIGIACCAVFSVEPFDPSKARYEWGPVVRLGFKSSNAANCNYVVIPVTLYRNLVTVKSNHLWLIYFDRELFFSFLRSIDNTLWELDHIVMEASVTNGQGLHLENEETLVLQPTTLMVIEDEAQLQ 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03060 782 Pfam NB-ARC domain 1 190 IPR002182 GO:0043531
Tsu02g03060 782 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515
Tsu02g03060 782 SUPERFAMILY "Winged helix" DNA-binding domain 200 297 IPR036390 -
Tsu02g03060 782 PRINTS Disease resistance protein signature 395 411 - -
Tsu02g03060 782 PRINTS Disease resistance protein signature 67 81 - -
Tsu02g03060 782 PRINTS Disease resistance protein signature 160 174 - -
Tsu02g03060 782 Pfam C-JID domain 627 722 IPR045344 -
Tsu02g03060 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 222 IPR027417 -
Tsu02g03060 782 SUPERFAMILY L domain-like 321 748 - -
Tsu02g03060 782 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 503 728 - -
Tsu02g03060 782 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 503 728 IPR044974 GO:0006952
Tsu02g03060 782 Gene3D Ribonuclease Inhibitor 487 571 IPR032675 -
Tsu02g03060 782 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 482 - -
Tsu02g03060 782 Gene3D Ribonuclease Inhibitor 312 486 IPR032675 -
Tsu02g03060 782 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 482 IPR044974 GO:0006952
Tsu02g03060 782 Gene3D - 125 210 IPR042197 -
Tsu02g03060 782 Gene3D - 1 118 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03060 Tsu-Chr2 33917870 33920973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03060 2 567 WRKY Transcription Factor Family AT4G12020 31.553 5.24e-61 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03060 - - mtr:MTR_4g081270 1079.32