Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03056 ATGGCAAGCAGCAGCAACTCCACTGCCTTAGCTCTGGTGACATTGCCAAAGAAGAGAAACAATTATGATGTGTTTGTCACCTTCAGAGGTGAAGACACTCGCAACAATTTCACTGATTTTCTTTTTAGTGCTCTCGAAGATAAAGGCGTTTCTGTATATAGGGATGACACTGATCTTCCAAAAGGTGAATCCATTGGACCTGAGCTCCTTTGTGCAATTGAAGACTCTCAGATTTTCATTGCCATCTTCTCAAAGAATTATGCTTCCTCAACTTGGTGTTTGCAAGAATTGGAAAAGATATGTGAATGCCTTCAAGTGTCTGAAAAACATGTTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGATGCCTTTGTCAAACATGAACGAATCCAACAAGACGATGATAAGGTGCAAAGATGGACGAAAGCTCTCAAACAAGTGGGAACAATCTCTGGTTGGGATGTGCGTCATAAGTCACAATCTGCACAAATTAAAGAGATTGTTCAAAGAATAATAGATATTCTAGATTGCACATCTCCATGTGTTTCAAAAGATTTAGTTGGGATGGATACTCCTatacaagaattagaaaatcatttatttttggaCTCTGTAGATGATGTTCGGGCTATAGGAATCTGTGGAATGGGAGGAATAGGGAAGACAACCCTGGCTACTACTTTGTATGCTAGAGTTTCTAACCAATTTGATGCATGCGGTTTTATTGATGATGTTAGCAAAGTTTATAGATCACATGTTGGTCCACTTGgtgtacaaaaacaaattctaCATCAAATAGTCGGCAAAAAACACAATCAGATATGCAATAGTCATGATGCAATTAATCTAATGCAACGTAGACTTGGTCGTGTAAGGACCCTTCTCATTCTTGATAATGTTGATCATCTTAAGCAACTAGAAATAATACCAGTGAGTCATGAATGGTTAGGCGCAGGTAGTAGAATCATTATCATTTCTAGAGATGAACATATCTTAAGAAAGTATGGAGTGGACGTTGTTTACAAAGTTCCACTCTTGAATGAGACTAACtctcaaaaattattttgccGACAAGCTTTCAAACTTGACCATATTTTGAATAGCTATGAAGGGTTGGTTAATGGTATATTGCATTATACCAATGGCCTACCATTAGCAATTGAAGTATTGGGCTCATTTTTATATGGTCTAAATATCTCTGAATGGAGAAGTGCATTGTCTAAATTGAGAGAAAGTCCGGACAAAAATGTCATGGATGTGCTACAAATAAGTTTTGATGGACTAGACAAGGCGGAAAAAGAAATATTTCTTCACATTGCTTGTTTTTTTAATCCCATTGACTCGGGTTATGTTAAAAATGTTCTAAATTGCTGTGGATTTCATGCTGATATTGGATTGAAAATTCTCATTGATAAATCGCTTATAAAAATTAAGGGTGAAAGTGACACGATTGAAATGCACAATTTATTGAAAGAGCTGGGCAGAAAAATTGTCCAAGAAAATTCAAACAATAAGTCAACAAAGTGGAAAAGGTTGTGGTATGAGGAACAACTCCACGATGTTATGTCAGAACATATGGAAAAGAATGTTGAAGCCATAGTTTTGAAGGATATGCCGGCTGCAATGGTTAAATACTTTTCAAATCTTAAATTGCTCATCATCAAGCATATTGACCCATTGGAGAATGCATCAGGAAGCCTCACTTGTCTTTCTAATGAATTAAGATATGTTGAATTGTTCAATTATCCATTCATGTATTTGCCATCAAGTTTTCAGCCCATTCAACTTGTTGAGTTGATATTGATTCATAGTAACATCGAACGACTATGGAAAGGAAAAAAGTATCTGCCCAATTTGAGACATTTGTGTCTATGCTATTCCCGAAATCTAATGGAGATACCAAATTTTGAAGAGTTCCCGAATCTTGAGAAGTTAAATCTGGAAGGATGTGAAAAACTTGAGAAGTTGGATCCTTCTATTGGACTTCTAACAAAGATTGTTTGCTTGAATTTGGAAGATTGCTTCAGTCTAATAAGCATACCCAACACCATATTTGGGATCAGCTCTCTTAAATACATAAACATGAGTGGGTGTTCCAAAGTGTCGTTTTACAATCCTGGGCCTATGAATATAGTTAAAAGGGCATCACATTTCCAGTCAACTTCTCCATTTTCAAATGCACCACACTGCGTTATGATTCCCTATTTCCCACTCCCGGTTGCGGGACCATGGTTATATCTTTTGAATGGAATTGATATTAGTTTTTGTCGTCTAAGCCAACTCCCGGATGCAATTGGATGCCTACATCATCTACAAAGGTTAAATCTTGGGGGAAACAATTTTGTGTCACTACCCAGCCTGAATGAGCTTTCCAAACTTGTATATTTAAACTTGGATCAATGCATGTTTTTGGAATCTTTGCCTCAACTTCCTTTCCCTAGTACTATCAACTGGGGGGATCTTGGTACTCACAGAGGTCGTTTGAAAATAGGATTGCACATTTTCAACTGTCCTAAATTCGGTGAGAGGGAATATAGAATTGCATTTTCATGGATGAAACAATTCATTCACGCAAACCCACAATGCCCTCATCCAATTGATATTGTTATTCCTGGAAGTGAAATACCAAGTTGGTTCAACAATCAAAGCAAGGGTGATACAATACTGATAGACAACTCTCCCATTAAGTATGACATTAACAATGATATCATTGGCTTTCTATGTTGTTCACTATTTTCTGTGGAACCTAGTACTGATTTAGAGTACTCAACTTTGCGAAGCATTTATGTCGAGATTGATCTTAATTTAGCTGGTTTGTACATAGTGGACGACTGGTATCTGACAAATCAAAATTATCTTGAAGTATTTTTCGAAGAAAGAGATCTTATTAAGGTCAAAACAAATCACATTTGGCTAACCTATTTCCCCCGGAAGTTGTCCGGGTATGTTGAGTTCCCTTTTGGCATTTGGGGCAGAATGGATGTTAAATTTGATAACCTTACAATTGGTCGGATGAGTAGTGAGGTAAAGAATTGCGGATATGGCTGGGTACGTAAACAAGATCTACAAGAGTTCAACTTAACAACGATGCATCCTGGAAACTCCTCAGCTTTGAAGCACAAGTTTTTGGCAATAGAAGACATTCATTCATCTGATTAA 3189 0.3659 MASSSNSTALALVTLPKKRNNYDVFVTFRGEDTRNNFTDFLFSALEDKGVSVYRDDTDLPKGESIGPELLCAIEDSQIFIAIFSKNYASSTWCLQELEKICECLQVSEKHVLPVFYDVDPSEVRKQSGIYGDAFVKHERIQQDDDKVQRWTKALKQVGTISGWDVRHKSQSAQIKEIVQRIIDILDCTSPCVSKDLVGMDTPIQELENHLFLDSVDDVRAIGICGMGGIGKTTLATTLYARVSNQFDACGFIDDVSKVYRSHVGPLGVQKQILHQIVGKKHNQICNSHDAINLMQRRLGRVRTLLILDNVDHLKQLEIIPVSHEWLGAGSRIIIISRDEHILRKYGVDVVYKVPLLNETNSQKLFCRQAFKLDHILNSYEGLVNGILHYTNGLPLAIEVLGSFLYGLNISEWRSALSKLRESPDKNVMDVLQISFDGLDKAEKEIFLHIACFFNPIDSGYVKNVLNCCGFHADIGLKILIDKSLIKIKGESDTIEMHNLLKELGRKIVQENSNNKSTKWKRLWYEEQLHDVMSEHMEKNVEAIVLKDMPAAMVKYFSNLKLLIIKHIDPLENASGSLTCLSNELRYVELFNYPFMYLPSSFQPIQLVELILIHSNIERLWKGKKYLPNLRHLCLCYSRNLMEIPNFEEFPNLEKLNLEGCEKLEKLDPSIGLLTKIVCLNLEDCFSLISIPNTIFGISSLKYINMSGCSKVSFYNPGPMNIVKRASHFQSTSPFSNAPHCVMIPYFPLPVAGPWLYLLNGIDISFCRLSQLPDAIGCLHHLQRLNLGGNNFVSLPSLNELSKLVYLNLDQCMFLESLPQLPFPSTINWGDLGTHRGRLKIGLHIFNCPKFGEREYRIAFSWMKQFIHANPQCPHPIDIVIPGSEIPSWFNNQSKGDTILIDNSPIKYDINNDIIGFLCCSLFSVEPSTDLEYSTLRSIYVEIDLNLAGLYIVDDWYLTNQNYLEVFFEERDLIKVKTNHIWLTYFPRKLSGYVEFPFGIWGRMDVKFDNLTIGRMSSEVKNCGYGWVRKQDLQEFNLTTMHPGNSSALKHKFLAIEDIHSSD 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03056 1062 SMART till_3 21 160 IPR000157 GO:0007165
Tsu02g03056 1062 Gene3D - 355 439 IPR042197 -
Tsu02g03056 1062 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Tsu02g03056 1062 Pfam C-JID domain 880 984 IPR045344 -
Tsu02g03056 1062 ProSiteProfiles Leucine-rich repeat profile. 780 801 IPR001611 GO:0005515
Tsu02g03056 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
Tsu02g03056 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 163 IPR035897 -
Tsu02g03056 1062 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 629 - -
Tsu02g03056 1062 Pfam Leucine Rich repeats (2 copies) 627 668 IPR025875 -
Tsu02g03056 1062 PRINTS Disease resistance protein signature 220 235 - -
Tsu02g03056 1062 PRINTS Disease resistance protein signature 647 663 - -
Tsu02g03056 1062 PRINTS Disease resistance protein signature 390 404 - -
Tsu02g03056 1062 PRINTS Disease resistance protein signature 297 311 - -
Tsu02g03056 1062 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 639 698 - -
Tsu02g03056 1062 SUPERFAMILY L domain-like 557 821 - -
Tsu02g03056 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 629 IPR044974 GO:0006952
Tsu02g03056 1062 ProSiteProfiles TIR domain profile. 20 185 IPR000157 GO:0007165
Tsu02g03056 1062 Gene3D - 186 350 IPR027417 -
Tsu02g03056 1062 Gene3D - 19 185 IPR035897 -
Tsu02g03056 1062 Gene3D Ribonuclease Inhibitor 491 727 IPR032675 -
Tsu02g03056 1062 Gene3D Ribonuclease Inhibitor 728 857 IPR032675 -
Tsu02g03056 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 639 698 IPR044974 GO:0006952
Tsu02g03056 1062 Pfam NB-ARC domain 201 428 IPR002182 GO:0043531
Tsu02g03056 1062 Pfam TIR domain 21 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03056 Tsu-Chr2 33887292 33891761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03056 21 828 WRKY Transcription Factor Family AT4G12020 29.376 3.00e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03056 - - mtr:MTR_6g488300 1119.76