Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03041 ATGTTTGGTTTTGGTAGAATTGTTTCTAATGTCGCTGTTAGCCTTCGTCAAAACCTATCGCTTCGTGGCGGTGTGCAAGTACGAAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGATGCCAAGCGACTTTCGTATGCTCTTCAGCATATTCACGGGATTGGCCGTGCAAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAAAACAAATATGTGAAGGATCTAAGCAAAAGAGAACTATATTCTCTTCGTGAATTGCTTTCCAAGTATTTGATTGGAAATGATTTGaaaaaGTTAGTTGAGAGAGATGTGGTAAGATTGGTGGGTATTCAATGCTACAGAGGGATCAGACACGTCGATGGTTTACCCTGTCGGGGACAGCGAACTCATACGAATTCTCGCACTAGGAGGACTATGCGTACTTACGGGGGTTCAAGATAA 450 0.4289 MFGFGRIVSNVAVSLRQNLSLRGGVQVRNINIGGGLGGEIPDAKRLSYALQHIHGIGRAKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYLIGNDLKKLVERDVVRLVGIQCYRGIRHVDGLPCRGQRTHTNSRTRRTMRTYGGSR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03041 149 Gene3D 30s ribosomal protein s13, domain 2 103 145 IPR027437 -
Tsu02g03041 149 Gene3D - 36 101 - -
Tsu02g03041 149 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 7 143 - -
Tsu02g03041 149 ProSitePatterns Ribosomal protein S13 signature. 117 130 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g03041 149 Pfam Ribosomal protein S13/S18 37 138 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g03041 149 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 7 143 - -
Tsu02g03041 149 SUPERFAMILY S13-like H2TH domain 37 143 IPR010979 GO:0003676
Tsu02g03041 149 Hamap 30S ribosomal protein S13 [rpsM]. 26 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g03041 149 ProSiteProfiles Ribosomal protein S13 family profile. 36 141 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03041 Tsu-Chr2 33620797 33622560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03041 13 142 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 27.922 4.88e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03041 K02952 - gmx:100527465 227.639