Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03025 ATGACGCAACCTTTTACGTTCCAAGGTCCTTGCAAATCTGCAACCATTAATGTTATGATTAGGGGAACAATTACTGCTCCACAAAGTCGTGAACATTGGAAATCGGACAGTAATGATCACGATTCTTGGATTACGTTCAATCACATAAGTGGCCTTATTGTGAATGGAGGGGGAACACTTAATGGCCAAGGTGCTTCTTGGTGGGACAAGAAGGGTGCAAGTGATAGGCCAACATTTTTCATCCTTCGCTATTCGCAAAAATCTAAACgctctcttttcttcttcaattcttcaacaAACGCTCTCTTTTATTCTACAACAAATCTTCGATTCAAGATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGCATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCCGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCCGATACAATTGACAATGTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAATATTCAGAAAGAATCTACCCTCCACCTTGTTCTTCGTCTCCGTGGTGGCCTCTAA 1254 0.4266 MTQPFTFQGPCKSATINVMIRGTITAPQSREHWKSDSNDHDSWITFNHISGLIVNGGGTLNGQGASWWDKKGASDRPTFFILRYSQKSKRSLFFFNSSTNALFYSTTNLRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03025 417 Gene3D - 2 115 IPR012334 -
Tsu02g03025 417 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Tsu02g03025 417 ProSiteProfiles Ubiquitin domain profile. 189 264 IPR000626 GO:0005515
Tsu02g03025 417 ProSiteProfiles Ubiquitin domain profile. 341 416 IPR000626 GO:0005515
Tsu02g03025 417 SUPERFAMILY Pectin lyase-like 2 107 IPR011050 -
Tsu02g03025 417 SUPERFAMILY Ubiquitin-like 88 188 IPR029071 -
Tsu02g03025 417 ProSiteProfiles Ubiquitin domain profile. 113 188 IPR000626 GO:0005515
Tsu02g03025 417 Pfam Ubiquitin family 267 338 IPR000626 GO:0005515
Tsu02g03025 417 Pfam Ubiquitin family 191 262 IPR000626 GO:0005515
Tsu02g03025 417 Pfam Ubiquitin family 343 414 IPR000626 GO:0005515
Tsu02g03025 417 Pfam Ubiquitin family 115 186 IPR000626 GO:0005515
Tsu02g03025 417 ProSitePatterns Ubiquitin domain signature. 291 316 IPR019954 -
Tsu02g03025 417 SUPERFAMILY Ubiquitin-like 340 416 IPR029071 -
Tsu02g03025 417 PANTHER UBIQUITIN 13 187 394 - -
Tsu02g03025 417 CDD Ubl_ubiquitin 189 264 - -
Tsu02g03025 417 Pfam Glycosyl hydrolases family 28 4 112 IPR000743 GO:0004650|GO:0005975
Tsu02g03025 417 CDD Ubl_ubiquitin 341 416 - -
Tsu02g03025 417 ProSitePatterns Ubiquitin domain signature. 215 240 IPR019954 -
Tsu02g03025 417 PRINTS Ubiquitin signature 165 186 IPR019956 -
Tsu02g03025 417 PRINTS Ubiquitin signature 123 143 IPR019956 -
Tsu02g03025 417 PRINTS Ubiquitin signature 144 164 IPR019956 -
Tsu02g03025 417 SUPERFAMILY Ubiquitin-like 188 264 IPR029071 -
Tsu02g03025 417 SUPERFAMILY Ubiquitin-like 264 340 IPR029071 -
Tsu02g03025 417 PANTHER UBIQUITIN 187 394 - -
Tsu02g03025 417 Gene3D - 189 264 - -
Tsu02g03025 417 Gene3D - 265 340 - -
Tsu02g03025 417 Gene3D - 341 417 - -
Tsu02g03025 417 PANTHER UBIQUITIN 13 87 319 - -
Tsu02g03025 417 PANTHER UBIQUITIN 13 319 417 - -
Tsu02g03025 417 SMART ubq_7 265 336 IPR000626 GO:0005515
Tsu02g03025 417 SMART ubq_7 341 412 IPR000626 GO:0005515
Tsu02g03025 417 SMART ubq_7 113 184 IPR000626 GO:0005515
Tsu02g03025 417 SMART ubq_7 189 260 IPR000626 GO:0005515
Tsu02g03025 417 CDD Ubl_ubiquitin 113 188 - -
Tsu02g03025 417 ProSitePatterns Ubiquitin domain signature. 367 392 IPR019954 -
Tsu02g03025 417 PANTHER UBIQUITIN 87 319 - -
Tsu02g03025 417 PANTHER UBIQUITIN 319 417 - -
Tsu02g03025 417 ProSitePatterns Ubiquitin domain signature. 139 164 IPR019954 -
Tsu02g03025 417 Gene3D - 116 188 - -
Tsu02g03025 417 CDD Ubl_ubiquitin 265 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03025 Tsu-Chr2 33421103 33432083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03025 341 417 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.24e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03025 - K08770 psom:113284139 599.742