Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03020 ATGAGCCGAAACATGAACAATTTCACGCCTTTGCCGGGGCTTCGGAGAACAGGTTCTAGAGCCTATGGTGATGCTTCTCACAATTATAATAATAGTCATGAATTCAATGAAGTTCCTGTGTTTTACAGATCTCATCACTCTACTAGGGCTAATATTCATGATGAGAGGAGTTCAGGTGCACAAGATCCACTGCGGTTGTGGGAAGTTAGAAGAACTCCTGCAGAACATCACAGAATACCAAATTTTCCGGCACAACCACCTAGAAGACAACAATCTTATGTTCAAAATGAGGACACGAGAAGGGGTTTCAATTTCAACCCACCCAGACTCAGACAGATTTTTCAACATTCACCTTCAAGATCAACATCAACAGAACAAACAAACACACAAGTTCCACAATCGGtagaaaattcaaaatcaactaTTTTGAGCAAGTTAAGGAAAGTAGTCTATGATCCTACACCGAAACGGTTAGCTAGAAGAGTGAGCTTATATTATAGGGGAAATGCTGCAAATGATTTGAAAGATACTGTGAAAGAAAATAAGGAAGACGGTATGAGATGTTCTATTTGCTTAGAAGATTTTGAGGCCAAAGAAGAAGTGATGCTTACACCATGTAACCACATGTTTCATGAAGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTTTGTAGGTTTGTGGTTTTTGAGGGAGTGAAGGGAAATTCTTCATCTTTTAATAGGAATGATATTACCAATTTGGAACCTAATGACATGATGATATCTGGAGAACTTTTGTCAATTTTGAGGGCTATGGAAGAAGCTTTTCAGTTAGAAAGTGTGAATTACTga 843 0.376 MSRNMNNFTPLPGLRRTGSRAYGDASHNYNNSHEFNEVPVFYRSHHSTRANIHDERSSGAQDPLRLWEVRRTPAEHHRIPNFPAQPPRRQQSYVQNEDTRRGFNFNPPRLRQIFQHSPSRSTSTEQTNTQVPQSVENSKSTILSKLRKVVYDPTPKRLARRVSLYYRGNAANDLKDTVKENKEDGMRCSICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEGVKGNSSSFNRNDITNLEPNDMMISGELLSILRAMEEAFQLESVNY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03020 280 MobiDBLite consensus disorder prediction 77 138 - -
Tsu02g03020 280 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 280 - -
Tsu02g03020 280 MobiDBLite consensus disorder prediction 110 138 - -
Tsu02g03020 280 CDD RING-H2_PA-TM-RING 188 229 - -
Tsu02g03020 280 Pfam Ring finger domain 187 229 IPR001841 -
Tsu02g03020 280 SUPERFAMILY RING/U-box 179 235 - -
Tsu02g03020 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 242 IPR013083 -
Tsu02g03020 280 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 280 - -
Tsu02g03020 280 SMART ring_2 188 228 IPR001841 -
Tsu02g03020 280 SMART ringv_2 187 229 IPR011016 GO:0008270
Tsu02g03020 280 MobiDBLite consensus disorder prediction 85 102 - -
Tsu02g03020 280 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03020 Tsu-Chr2 33371875 33373188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03020 137 273 C3H Transcription Factor Family AT3G58720 50.000 3.79e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03020 - K19041 gmx:100810607 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03020 02 33371875 33373188 Tsu02g03020 02 33371875 33373188 ECH