Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03012 ATGGCCAGTACCAGCAGTAGCAGCTCTTCAACTCTGATGACATATCCAAGGAGATATTACTATGATGTATTTGTGAGCTTTAGAGGTAAAGACACACGCTTCAACTTCACTGATCATCTTTTTGCTACCTTCCAAAGAAAAGGCATTATTACATTCAGGGATGACACTAAGCTCAACAAAGGTGAATCCATAGCACCTGAGCTACTTAGTGCAATCCAAGCCTCTCAGATTTACGTTGTGGTCTTTTCTAAGAATTATGCTACTTCAACTTGGTGCTTGCGAGAATTGGAATGGATCCTTGAATGTGCTCAACTATCTGGAAAACGTGTTCTGCCTGTTTTCTATGATGTTGATCCATCAGAGGTGCGATATCAAAAAGGAAGTTATGGTGAAGCCTTTTTGAAACACGAACAAAGATTCCAACGAGACTCAGAAATGTTACAAAGATGGAGGGAAGATCTCACACAAGTGGCCAATCTCTCTGGTTGGGATCTACGTGACAAACCACAATATGCAGAGATTGAAAAGATTGCTGAAGAGATTATAAATATATTGGGTTACAAGTTTTCAAGTCTTCCAAAAGATTTAGTTGGGATGGATTCTTCTATAAAAGAATTAGAAAACCATTTACTTTTGGACATGGTTGACGGTGTCCGGGTTGTAGGAATTTGTGGGATGGGCGGAATAGGGAAGACAACTCTAGCTACTGTTTTATACAACAAAATCTCTCATCAATTCCACGTGTGCTGCCTCATTGATGATCTAAGCAAAATTTATAGGCACGATGGTCTAATCGGTGCTCAAAAGCAAATTCTACATCAAACTCTAGGTGAAGAACGCCTTCAAACATGCAATCTTCACAGCACATCTAACTTGATACAAAGTAGGCTACACAATGTAAAGTCCCTTGTAATTCTTGACAATGTTGATCAAGTTGAGCAACTTGAGAAATTAGCTGTGAGTCGTGAATGGTTAGGTGTGGGGAGTAGAATTATTATAATTTCTAGAGATGAGCATATCTTGAAAGACTATGGAGTGGATGTTATCTACAAAGTTCCACTCTTGAATCAGACTGACTCTCTTCAATTATTTTGTCGAAAAGCTTTCAAACTTGATCATACTATGAGTAGTTATGATAAGTTGCCATTTGACATACTATGGTATGCTAATGGCCTACCACTGGCAATTAAAGTATTGGGATCATTTTTGTTAGATCGAGAGATTTGTGAATGGAAAAGTGCTTTGGGTAGATTGAGAGAAAGTCCAAACAAAGATATCATGGATGTGTTGCGATTAAGTTTTGAAGGGTTGGagaaattggaaaaagaaataTTTCTCGATGTTGCTTGTTTTTTCAATAGGCGTGACGGGGATTATGTCAAAAACATTCTAAATTGTTGTGGATTTCATGCTGATATTGGATTAAGAGTTCTAGTTGATAAATCACTTCTATGCATTTCAGAAGaagataatataattaaaatgcaTAATTTGTTACAAGAGTTGGGCAGAAAAATTGTTGAAGAAAATTCGTGTCAAGTGTCAAGAAAATGGAGTAGGGTGTGGCTCCACGAACAACTGCACAATGTTATGTTGGAGAATGTGGAAAAGAAGGTTGAAGCCATATGTTTTTTCCGTGATAGAGATGAAAGACAAATGAAAATATCAGTCTTGGCTGAAGCATTGTCGAAAATGAGTCATCTTAGATTTCTCATAGTCAAGAAcgtgatagtttcaggaatcCTCAGCTACATTTCTAACGAGTTAAGATATGTGGAGTGGAAGAAATACCCTTGTAAGTATTTGCCACCAAGTTTTCAGCCCAATCAACTTGTTGAATTGATCTTAAAGCAAAGCAGTGTCAAACAACTATGGAAAGATAAGAAGTATTTGTTCAATTTGAGAACTTTGGATATGAGTTACTCGAAAAATCTACGAAAGATGCCAAATTTTGAAGGCGTCCGAAATCTTGAGCGGTTAAGTTTTGAAGGATGTGTGAAATTGGTGCAGATTGATCCAACTATTGGGGTTCTAAGAAAGCTTGTTTTCTTGAATTTGAAAGATTGCAAGAATCTAGTAAGCATACCAGACAACATTTGTCTAATCTCTCTTGAATGTCTAAATCTTTCAGGGTGTCGCAAATTGTTTAATCTGAGACATTCCAGTATAAGTGAAAATGCATCACATTCCCAATCAACGATGTCCTCCATCTTGAAATGGACCAAGTTTCGTTTCCATTCCTTTAAACCCAGTGCACACAAATATTTAGCTAGTTGTTTATTGGACTCCTTGCTTCAATTATCTTGTTTGCATAAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCTAATGTAATTGGATGCTTAAGATTGCTAGAAGAATTAAACTTAGGCGGAAACAATTTTGTTACATTACCTAGCATGTGTGACCTTTCCAAACTTGTATATTTAAACTTGGAGCATTGCAAGATGTTAGAATATTTGCCTCGACTTCCTTTTCCTATGACTATCAGTCATGACCTTCGTATTAATGATATTGACATGACTGATTTTTGGAGGAGAGTAGGATTGATCATTTTCAATTGTCCTAAATTGGGTGAGAATGAAAGTTGCAGTAGCATGGCGTTTTCATGGATGACACAATTGATTCACGCAAGACAACAATCCTCCACTGCCTCCTTTCATGAGATCATTGATATTGTTATTCCAGGAAGTGAAATACCAATTTGGTTCGACAATAAGAGCGATGGTGATTCAATAAGAATGGACCTATCTCCCATTATTCATGACAATGGCAACTATTTCGGTGGCATTGCTTGTTGTGCAGTATTTTCTGTCGCACCTGTTGATCCAATTACGGCAACAGATGCACGCAGACCCGACATAGAGCTATGTATTTCTAATAGTAAAACTAACTTAAGGTGGTATGCAATCATTCCAGTAATTCTTGAAAGACGTCTTATTGAGGTCAAATCAGATCACATTTGCCTAATCTATTTCCCTATAGAATCATTCTTTCATATTCTGAAGTGGATAGATGTAACTCTCAGCCATCTTGATGATTTCAAAATGAAAGTTCGCACTAAGAACGGCGAATGTATCAATCTGGAAGTTCAGAATTGTGGGTATCATTGGGTATATAAACAAGATCATGCAACGCTGCAGAAATTGCTTTTTGGCAATGGAAGATGA 3195 0.3665 MASTSSSSSSTLMTYPRRYYYDVFVSFRGKDTRFNFTDHLFATFQRKGIITFRDDTKLNKGESIAPELLSAIQASQIYVVVFSKNYATSTWCLRELEWILECAQLSGKRVLPVFYDVDPSEVRYQKGSYGEAFLKHEQRFQRDSEMLQRWREDLTQVANLSGWDLRDKPQYAEIEKIAEEIINILGYKFSSLPKDLVGMDSSIKELENHLLLDMVDGVRVVGICGMGGIGKTTLATVLYNKISHQFHVCCLIDDLSKIYRHDGLIGAQKQILHQTLGEERLQTCNLHSTSNLIQSRLHNVKSLVILDNVDQVEQLEKLAVSREWLGVGSRIIIISRDEHILKDYGVDVIYKVPLLNQTDSLQLFCRKAFKLDHTMSSYDKLPFDILWYANGLPLAIKVLGSFLLDREICEWKSALGRLRESPNKDIMDVLRLSFEGLEKLEKEIFLDVACFFNRRDGDYVKNILNCCGFHADIGLRVLVDKSLLCISEEDNIIKMHNLLQELGRKIVEENSCQVSRKWSRVWLHEQLHNVMLENVEKKVEAICFFRDRDERQMKISVLAEALSKMSHLRFLIVKNVIVSGILSYISNELRYVEWKKYPCKYLPPSFQPNQLVELILKQSSVKQLWKDKKYLFNLRTLDMSYSKNLRKMPNFEGVRNLERLSFEGCVKLVQIDPTIGVLRKLVFLNLKDCKNLVSIPDNICLISLECLNLSGCRKLFNLRHSSISENASHSQSTMSSILKWTKFRFHSFKPSAHKYLASCLLDSLLQLSCLHKLDISFCGLSQLPNVIGCLRLLEELNLGGNNFVTLPSMCDLSKLVYLNLEHCKMLEYLPRLPFPMTISHDLRINDIDMTDFWRRVGLIIFNCPKLGENESCSSMAFSWMTQLIHARQQSSTASFHEIIDIVIPGSEIPIWFDNKSDGDSIRMDLSPIIHDNGNYFGGIACCAVFSVAPVDPITATDARRPDIELCISNSKTNLRWYAIIPVILERRLIEVKSDHICLIYFPIESFFHILKWIDVTLSHLDDFKMKVRTKNGECINLEVQNCGYHWVYKQDHATLQKLLFGNGR 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03012 1064 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Tsu02g03012 1064 Gene3D Ribonuclease Inhibitor 751 901 IPR032675 -
Tsu02g03012 1064 Gene3D - 15 187 IPR035897 -
Tsu02g03012 1064 Gene3D Ribonuclease Inhibitor 508 737 IPR032675 -
Tsu02g03012 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
Tsu02g03012 1064 Pfam TIR domain 21 183 IPR000157 GO:0007165
Tsu02g03012 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 193 1052 IPR044974 GO:0006952
Tsu02g03012 1064 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 193 1052 - -
Tsu02g03012 1064 SUPERFAMILY L domain-like 555 853 - -
Tsu02g03012 1064 SMART till_3 20 160 IPR000157 GO:0007165
Tsu02g03012 1064 Pfam C-JID domain 903 1051 IPR045344 -
Tsu02g03012 1064 Gene3D - 354 438 IPR042197 -
Tsu02g03012 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 447 IPR027417 -
Tsu02g03012 1064 PRINTS Disease resistance protein signature 389 403 - -
Tsu02g03012 1064 PRINTS Disease resistance protein signature 220 235 - -
Tsu02g03012 1064 PRINTS Disease resistance protein signature 296 310 - -
Tsu02g03012 1064 PRINTS Disease resistance protein signature 629 645 - -
Tsu02g03012 1064 Pfam NB-ARC domain 202 423 IPR002182 GO:0043531
Tsu02g03012 1064 Gene3D - 188 349 IPR027417 -
Tsu02g03012 1064 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03012 Tsu-Chr2 33234982 33241558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03012 15 796 WRKY Transcription Factor Family AT4G12020 30.797 1.84e-90 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03012 - - mtr:MTR_4g080070 1185.63