Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02979 ATGGAAATGGAAGATTTTGACTGGAGTTATGATATACTTGGAGATGCAAATGCAACTGAGAGAAGAATTATTAAAGATGGTTTTCAAGTAAACAATGAGGAAATTGGAAATGGGTATGGGTCATCTTTCTCTCTAGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCACCAGCTAGAATGGTACAAAAGGGTATGTCCACTGAGAGAAGTGTTGAAGCTTTGAAGAATCATAGTGAGGCAGAGAGGAGGAGAAGAGCTAGGATTAATGCACATCTTGATACACTTCGAAGTGTCATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTTGGTGAAGTTATTAGACATTTGAAAGATCTAAAAAGAAATGCAGCACAAGCATGTGAAGGATTAATAATACCAAATGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGAGTAAATGGCTTTCCATATTCAATTAAAGCATCACTATGTTGTGAATATCAACCAGGGTTATTGTCTAACATAAGACAAGCACTAGATGCTCTTCATCTCATAATCATGAAGGCAGATATTGCAACTTTTGGAGGTAGAATGAAGAATGTATTTGTGGTAATTAGCTGTGAGGAACATAATTTTGATGCTGCTGAATATAGACAGTTTCTTGCTGGTTCTGTTCACCAAGCTCTAAAGTCTGTGCTCAATAGATTTTCTGTTTCACAAGATATGTTAGGAGCTAGAAAAAGAAGGAGGGTTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 789 0.3676 MEMEDFDWSYDILGDANATERRIIKDGFQVNNEEIGNGYGSSFSLVLDRERGELVEAPARMVQKGMSTERSVEALKNHSEAERRRRARINAHLDTLRSVIPGALKMDKASLLGEVIRHLKDLKRNAAQACEGLIIPNDNDEISVEEQEGGVNGFPYSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGGRMKNVFVVISCEEHNFDAAEYRQFLAGSVHQALKSVLNRFSVSQDMLGARKRRRVSIFSSSSLEDFL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02979 262 Gene3D - 68 130 IPR036638 GO:0046983
Tsu02g02979 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
Tsu02g02979 262 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Tsu02g02979 262 SMART finulus 79 128 IPR011598 GO:0046983
Tsu02g02979 262 CDD ACT_UUR-ACR-like 161 232 - -
Tsu02g02979 262 PANTHER TRANSCRIPTION FACTOR BHLH30 6 261 IPR045847 GO:0003700|GO:0006355
Tsu02g02979 262 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 261 - -
Tsu02g02979 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02979 Tsu-Chr2 32839280 32841111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02979 60 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.837 6.87e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g02979 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02979 - - gmx:100788819 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02979 02 32839280 32841111 Tsu02g02979 02 32839280 32841111 ECH