Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02956 ATGTGCTGCGTTTTTCCGACGACATTTCCTACGAAAAAAGGCTTTATTCCTAGGAGCTATGCGGTAGGAAACCCAAAGAATTCTTGTAGTTATATAGTGGAGACGGTTGTGATCATCAACGTGGAGCCCAACAGAGAGTGCGTGGAGCTTTTGAGACCAAATCAACGGTCCATATGGGTTGTGAAAGGAGCATTCACTGCGGGGAAACATCGAATCTACGACAATAACAATTTCCTAAGGATGCAAAGAAATATTAGCAACAATGGTATGCATCAAGCATGTGCAGCATGCAaacatcaaagaaaaaaatgcagTGAAAATTGCATATTAGCACCTTATTTTCCATCAAATAGAAGTAAAGAATTCAAAGCAGTGCACAAAATTTTTGGTGTTAGCAACATAACAAAGTTGGTAAGGAATGCTCAAGAAGTAGATAGAAAAAGAGTTGTGGATTCATTGATATGGGAAGCAATTAGTAGACAAAAGGATCCTATAAATGGTTCTTATGGAGAGTATATAAAAGTATGCAatgagtataaaaaaatatttgaagaacTTAAGATGTTTAGAGAACACCAAAATCAATTGTTGCAAATGCCAACTCATCATGAGAATAAGAATGGTATTATGGATTCTACTACAATTTATAATGCATATTGTTCAAATTATTTACAAGATCTTGAGAGTTTGAGGACAGAAGTTGTCATCCCAATTCAGCAGCACTCACAATCATACTATATTGCAGGTGATGAATTCAACCAGTGA 765 0.3451 MCCVFPTTFPTKKGFIPRSYAVGNPKNSCSYIVETVVIINVEPNRECVELLRPNQRSIWVVKGAFTAGKHRIYDNNNFLRMQRNISNNGMHQACAACKHQRKKCSENCILAPYFPSNRSKEFKAVHKIFGVSNITKLVRNAQEVDRKRVVDSLIWEAISRQKDPINGSYGEYIKVCNEYKKIFEELKMFREHQNQLLQMPTHHENKNGIMDSTTIYNAYCSNYLQDLESLRTEVVIPIQQHSQSYYIAGDEFNQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02956 254 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 83 212 - -
Tsu02g02956 254 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 83 212 - -
Tsu02g02956 254 ProSiteProfiles LOB domain profile. 92 193 IPR004883 -
Tsu02g02956 254 Pfam Lateral organ boundaries (LOB) domain 93 189 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02956 Tsu-Chr2 32518182 32522907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02956 91 190 AS2 family AT1G06280 60.000 3.15e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g02956 LOB 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02956 - - vra:106780610 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02956 02 32518182 32522907 Tsu02g02956 02 32518182 32522907 ECH