Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02952 ATGGCGGTTCCGTTTCTTCTCCGTTCTCTCTACTCTTCCACCAAAAAATCCTTTTCCTCTTCTTCACCTTTCACTCCATCTCCATCTCGTTTCTTCTCCCGCGCCTTCTCTTCTGCTCCTGCCGCCGCCACCGATCCCACCGTATCCCCTGACCCCAGCCGCCTCCGCAACGTCGCTGTCATCGCTCATGTCGACCACGGCAAGACAACTCTCATGGACCGACTTCTCCGTCAGTGCGGTGCTGATATCCCTCACGAACGCGCCATGGATTCCATTTCACTCGAAATTGAGCGCGGCATCACCATCTCTTCCAAGGTTACTTCTGTTTTGTGGAAAGAAAATGAGCTCAACTTGGTGGATACACCTGGACACGCTGATTTTGGTGGTGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCCCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTTCTTTTAAACAAAGTAGATCGGCCATCAGTTACCGAGGAGATGTGCGATGAAGTTGAGAGTCTGGTGTTTGATCTGTTTGCCAACCTGGGTGCTACAGAGGAGCAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATTGTATCACATGTCCTTCCACCAAATGCAAACATTGATGCATCTTTCCAAATGCTGGTTTCAATGATGGAGCGGGACTCTTATCTTGGGCGGATTTTGACTGGTCGTGTGTTTTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAAAGATTCTGGCGCTGAAAAAATTGAAGCTGGAAAGGTggtgaaaataatgaaaaggaGGGGTACAACCATGATTGTAACTGATTGTGCTGGAGCCGGCGATATAGTTTCAATTGCTGGTTTGTCAAGTCCATCAATCGGCCATACAGTCACTACTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGACCCCCCAACAATTTCTATGACCTTTGGTGTAAATGATTCCCCGTTAGCTGGTCGTGATGGTACTCATTTAACTGGGGGAAAAATTGGTGATCGACTAATGGCTGAGGCTGAAACCAACCTTGCCGTAAATGTGCTTCCAGGCATGTCAGAAACATTTGAAGTTCAAGGAAGAGGAGAACTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAATGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAAGCCTTGTCTCACAGACGAGCTGAGATTGCTGACATGGGTCCTGTCGCGGGAGCTGTTGGTCGAACTAAGTTGTGTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTATTCAGCAGTGAGACGCGTGGAACTGGGTTTATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTATCAGTGGGTTATGGTCCAATCACAGCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGTGATACAGATCTCGATGTTAATCCAGTGAGGGCTAAACAACTTACAAATATACGTTCTGCTTCCAAGGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCTTCAGATGAGCTTATCGAGGTTACTCCAAAGACCATCCGGTTACGAAAGAAATACCTTGATGCCAACAAGCGTAAAACCATGAGTAGAAGGCAAAAGGAATGA 1992 0.4613 MAVPFLLRSLYSSTKKSFSSSSPFTPSPSRFFSRAFSSAPAAATDPTVSPDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLEIERGITISSKVTSVLWKENELNLVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEEMCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVSHVLPPNANIDASFQMLVSMMERDSYLGRILTGRVFSGVVRVGDRVHGLRNKDSGAEKIEAGKVVKIMKRRGTTMIVTDCAGAGDIVSIAGLSSPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLMAEAETNLAVNVLPGMSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEIADMGPVAGAVGRTKLCLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITAHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKQLTNIRSASKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSRRQKE 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02952 663 Gene3D - 445 539 - -
Tsu02g02952 663 Gene3D - 53 251 IPR027417 -
Tsu02g02952 663 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 55 655 IPR006298 GO:0005525
Tsu02g02952 663 CDD BipA_III 362 439 - -
Tsu02g02952 663 Pfam Elongation factor Tu GTP binding domain 54 247 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 251 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 TIGRFAM small_GTP: small GTP-binding protein domain 56 194 IPR005225 GO:0005525
Tsu02g02952 663 CDD BipA_TypA_II 258 355 - -
Tsu02g02952 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 260 IPR027417 -
Tsu02g02952 663 PANTHER ELONGATION FACTOR FAMILY PROTEIN 5 662 - -
Tsu02g02952 663 CDD TypA_BipA 55 250 - -
Tsu02g02952 663 Gene3D Translation factors 252 356 - -
Tsu02g02952 663 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 PRINTS GTP-binding elongation factor signature 169 178 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Tsu02g02952 663 SUPERFAMILY EF-G C-terminal domain-like 454 570 IPR035647 -
Tsu02g02952 663 SUPERFAMILY EF-G C-terminal domain-like 360 443 IPR035647 -
Tsu02g02952 663 Gene3D bipa protein 540 655 IPR042116 -
Tsu02g02952 663 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 662 - -
Tsu02g02952 663 Pfam Elongation factor G C-terminus 452 535 IPR000640 -
Tsu02g02952 663 Gene3D Elongation Factor G (Translational Gtpase), domain 3 363 647 - -
Tsu02g02952 663 SUPERFAMILY Translation proteins 200 355 IPR009000 -
Tsu02g02952 663 Pfam Elongation factor Tu domain 2 272 346 IPR004161 GO:0005525
Tsu02g02952 663 CDD BipA_TypA_C 454 534 IPR035651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02952 Tsu-Chr2 32481997 32493017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02952 54 178 Eukaryotic Initiation Factors Gene Family AT3G22980 43.511 5.41e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02952 K06207 - gmx:100789218 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02952 02 32481997 32493017 Tsu02g02952 02 32481997 32493017 ECH