Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02950 ATGGGTGGATTCATGTTAGgttcaaagaagaagaaaaacaacaagAGTCAAGGTGGTTTTGAAACACTAGGTCTAAATCCCAATGTATTCAGAGGAATCAGACGTAAAGGTTACAAAGTTCCGACTCCAATTCAGAGGAAGACGATGCCTCTCATTCTCTCCGGCGTCGATGTCGTTGCTATGGCTCGGACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTTCCCATGCTTCACCGACTTAACCAGCATATTCCTCAGGGTGGCGTTAGAGGACTCATTTTGTCTCCGACTAGGGATTTGGCACTTCAAACTCTTAAGTTTACCCAAGAGCTTGGTCACTTCACagACCTTCGTGTTAGTTTGTTAGTTGGTGGTGATAGTATGGAAAGTCAATTTGAGGAGTTATCTCAGAGTCCAGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGGATGGGTTTTGCTGAGCAGCTACATCAAATTCTTGCTCAGCTTGGTGAGAACCGTCAGACTTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCAGAATTCGCTAAGGCCGGTCTGCGAGACCCTCGCCTTGTTCGCCTCGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATCGGTTCTGATGAGCAGACTTTAATTTTTGTATCCACTAAACATCATGTTGAGTTTCTCAACTCGTTGTTTCGGCAAGAGGGTATCGAGCCTTCTGTATGTTATGGAGACATGGATCAAGATGCTCGCAAAATCAATGTGTCCAAGTTTAGGTCTAGAAGGACAATGTTGTTGATTGTCACTGACATTGCTGCTCGGGGCATTGACATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTTCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGAGTTGCAAGGGCAGGTCGTACTGGTACTGCTTATTCTTTCTTGACTACCGAGGATATGGCTTACCTCTTGGATCTTCATTTATTTCTCTCAAAACCAGTCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATGTCAAGAATTGACCAGGCAATGGCAAACAGAGAAACCATTTATGGTCGTTTTCCACAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAGCTGGAAGCGTTGCAGAGAGCCTGTAAAAATGCATTCCGTTTATATTCTAAAACGAAACCCTTACCCTCAAAGGAGTCCATAAGAAGAGTAAAAGATTTGCCAAAAGAAGGTCTGCATCCGATTTTCAACAAACTGTTGGGAACGGGGGAGTTAACAGCAATTGCATTTTCCGaacatttgaaaaagtttagGCCAAAGCAGACAATTTTGGAAGCAGAAGGAGAAGCAGCTAAATCAAAGGGTGGTCAGCGGGTTGATGTGATGAAAAGGAAAAGAGCCGTTCATGATAGCACTATAAATTTGGTTCATGAACACCAATCTAAGACCAAGAGTAATAATGAACAGGACGAAAATCAATTGGAAATTCCTTCTTCTGTGGAGAAAGGGAGAAAAGCAGCACGCGGTTCTAAGAGAAAGCCAGAAAGCTTCAAGGACGAGGATTTTTATATAAGTTCCATACCTAAAAATCATCACATGGAGGCAGGCCTTGCAGTAAAAGCTAAAGAAGGCTTTTCTTCAAACAGATTGGATGATGCTGTCCTAGATCTAGTTGCAGATGATGGTGCTGGcattaagaaacaaaaatctgTATATCACTGGGATAAGAGGAGTAAAAAATACATCAAGTTAAACAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGCGGTGCGAAAACAAAGACCAACAAGACTGGTATATATAAAAAGTGGAAGGAACGCTCACACTCCAAAATATCTCTTAAAGGGACAAGTGCTGATGGTGATGCTCAGGAATCAGCCAGTTCTAGAGGATCTTACCGACAAGGTGGTAGGAATTTCAGAGGCGGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAGAAAGCCAacaaaatttcttatattaagaGCAAGTCACCAAAGGGTAAAAAATCTGGCAGAAagggaaataataataataataataataaaaaaagaaaatttaagtAG 2346 0.4058 MGGFMLGSKKKKNNKSQGGFETLGLNPNVFRGIRRKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHRLNQHIPQGGVRGLILSPTRDLALQTLKFTQELGHFTDLRVSLLVGGDSMESQFEELSQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFRQEGIEPSVCYGDMDQDARKINVSKFRSRRTMLLIVTDIAARGIDIPLLDNVINWDFPSKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPVKAAPTEEEVLQDMDGVMSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPKEGLHPIFNKLLGTGELTAIAFSEHLKKFRPKQTILEAEGEAAKSKGGQRVDVMKRKRAVHDSTINLVHEHQSKTKSNNEQDENQLEIPSSVEKGRKAARGSKRKPESFKDEDFYISSIPKNHHMEAGLAVKAKEGFSSNRLDDAVLDLVADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKTNKTGIYKKWKERSHSKISLKGTSADGDAQESASSRGSYRQGGRNFRGGKKQHSMPNAHVRSEIKDMDQIRKERQKKANKISYIKSKSPKGKKSGRKGNNNNNNNKKRKFK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02950 781 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 777 - -
Tsu02g02950 781 MobiDBLite consensus disorder prediction 542 580 - -
Tsu02g02950 781 MobiDBLite consensus disorder prediction 685 781 - -
Tsu02g02950 781 CDD DEADc_DDX54 18 223 - -
Tsu02g02950 781 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Tsu02g02950 781 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Tsu02g02950 781 Pfam DBP10CT (NUC160) domain 621 682 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Tsu02g02950 781 CDD SF2_C_DEAD 244 365 - -
Tsu02g02950 781 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 9 777 - -
Tsu02g02950 781 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Tsu02g02950 781 Gene3D - 5 225 IPR027417 -
Tsu02g02950 781 MobiDBLite consensus disorder prediction 726 750 - -
Tsu02g02950 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Tsu02g02950 781 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g02950 781 SMART ultradead3 37 237 IPR014001 -
Tsu02g02950 781 Gene3D - 235 469 IPR027417 -
Tsu02g02950 781 SMART helicmild6 275 356 IPR001650 -
Tsu02g02950 781 MobiDBLite consensus disorder prediction 690 711 - -
Tsu02g02950 781 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Tsu02g02950 781 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Tsu02g02950 781 SMART DBP10CT_2 621 683 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02950 Tsu-Chr2 32454932 32464844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02950 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 4.68e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02950 K14808 - gmx:100806274 1258.82