Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02926 ATGCTAAAAAATATGGATGAAGTAGAAATCACAAATGGTAATAATTTCCTTCAAAATCCAACAACTAGTGCTTCTAATAACCCTCCTACtttgaagagaaaaagaaacctCCCAGGAAATCCAggcataaacaatgatattttttatttaatttgcaCAGATCCTGAAGCAGAAGTTATAGCTTTATCACCAAAGACTCTTATGGCTACAAACAGATTCTTATGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAACTCCATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAAAgaacaaataaagaaataagGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAACACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCTGATTGGAAAGCTCATTCAAAAACCTGTGGTACTAGAGAGTACAAATGTGATTGTGGAACTATCTTTTCAagCAGGAGAGACAGCTTCATAACTCATAGAGCCTTTTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAACTCATTATTAAGGGGTAACATTGGTAATTACAATATAATGGGAACAACATCCTTAGTCCCTAACAACAACATGTCAAACcatttttcatcaattttcaaaCCAATTTCAACTCCTcctgatcatcatcatcatcatcatcatcatgaatCAATATCAACCAATCAAACTAGAGGACTCTCCCTTTGgatgaatcaaaatcaaacatctCATAATTCTCAACCTCATGAAACAATCATCACCACCAATGGAAATTCTACTTTGCATGAgattcatcatcaacaacttgACACAAGAGGATTAATATATGGTGTGAATGATAATCCAAACTCAAATAATTATCAGCTTAATTGGGTTTTTGGAAATAAAATTTCCTCTAATTGCAACCAAGAATTAATCACTAGTACTACAACTTCACTTCCACTAGGTAACATTAATGTTAATGTTAAGGATGTTGATGCTGCTACTAGCACACAAATTTCTTCCTTGTATAGCTCACAACACCAAATACAATcaaatcaaacatcatcaacaaacaTGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAGATTGGATCAACATCAAGTGATACATCATTCCTTGGAAGTTTAGGTTTGAAATgcagtaataataataatattactaaTGATGTGAATAAGTTTGGTATGTATGGTACTACAAGTTCATTACTCATTAGTCTTGGCAATGAAGAAGCTCATAACACTGCATGTGATTTTTCACAAATGCAACCTTCTAAACGTAGACATCTGCAAAGTGATGAGAATGGAGGTGGAGGGCAAACAAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCT 1497 0.3133 MLKNMDEVEITNGNNFLQNPTTSASNNPPTLKRKRNLPGNPGINNDIFYLICTDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIRKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSSRRDSFITHRAFCDALAEETARVSAASEINNNSLLRGNIGNYNIMGTTSLVPNNNMSNHFSSIFKPISTPPDHHHHHHHHESISTNQTRGLSLWMNQNQTSHNSQPHETIITTNGNSTLHEIHHQQLDTRGLIYGVNDNPNSNNYQLNWVFGNKISSNCNQELITSTTTSLPLGNINVNVKDVDAATSTQISSLYSSQHQIQSNQTSSTNMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNNITNDVNKFGMYGTTSSLLISLGNEEAHNTACDFSQMQPSKRRHLQSDENGGGGQTRDFLGVGVQTICHP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02926 499 Gene3D Classic Zinc Finger 70 170 - -
Tsu02g02926 499 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Tsu02g02926 499 MobiDBLite consensus disorder prediction 10 38 - -
Tsu02g02926 499 MobiDBLite consensus disorder prediction 10 33 - -
Tsu02g02926 499 MobiDBLite consensus disorder prediction 465 487 - -
Tsu02g02926 499 MobiDBLite consensus disorder prediction 253 273 - -
Tsu02g02926 499 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Tsu02g02926 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Tsu02g02926 499 PANTHER F-BOX ASSOCIATED PROTEIN 31 495 - -
Tsu02g02926 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02926 Tsu-Chr2 32234678 32237143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02926 27 498 IDZ Gene Family AT1G03840 51.064 3.60e-145 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g02926 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02926 K25870 - gmx:100790620 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02926 02 32234678 32237143 Tsu02g02926 02 32234678 32237143 ECH