Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02911 ATGCTTGCAGTGACACCATTGAGGAACACCAAAGATGAAAACCAAGGAGAGATGGAGAGTTTTTCGATTACAACCAATGACTTCGGTGACCTATCGGACGGAAATTTATTGGAAAGCATCAACTTCGACGACTTCTTTGTTGGCATCAACGTCGATGGAGACATCTTGCCCGATTTGGATATGGACTCGGAGATGTTTGCCGAGTTCTCCGCAAGTTATGGGGAGGAATCTGATATAAACTCATCTGCTATAAACAAAACCGATGAAAAGaattattcaaaaaatgaagaagaagaagaagaagataaaacaatttatttggGTCGTCAAGGTTCGGAAGAGACAGTGAGCAAAAGGAATGAATCTGTGGTAGTGAATCCTCCATTGCAAAAAAATGGTGGTGGGAAAGGAAGAAAATCATCAAGTCAATCAAAGAACACTCAAGGGAAGAGAAAAGTTAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGGGTGGAGAAAGCGGTGCCTTCGAGGATTTTGGAGCTTATGGGAATCGATTGTCTCACTCGCCATAACATTGCCAGCCATCTTCagAAATATAGGTCACATAGAAAACATTTGCTAGCACGTGAAGCAGAAACAGCAAGTTGGAATCAAAGGAGACAAGTGTATGGAGGTGTAGGAGGAAAAAGAGAGGTGATGAGTCCATGGCCATCAGCTGCAGCAGCACCAATCATAGGTTTCCCTCCTACTCCTACCCCTCCACCTCCCATGACTCCATTGCACCATCATTTTAGACCCTTACATGTATGGGGGCATCCTTCAATGGACCAATCTTTTATGCATATGTGGCCTAAGCCGCATCTACAACATTCCACGCGGCCGCAGCCTCTCTCATGGCCACCGGCGGCAGCTCCTCCTCCACCTCATGACCCTTCATTTTGGCATTCTCACCGCCAACTGACTCCAAACGCAATAATCCCAGGAACACAGTGTTTCTCACAGCATCTGACAACAGTGAGATCATTTGGATGTCCAATTCCCGGCGGCATCCCACCGCATGGTATGCACAAAGCAGATCAGGCCATCGCCGCTCCTGGACCCGCTCCCTTCGACTTCTATCCGACAAAGGAGAGCATAGACACAGCTATTGGAGATGTTTTATCAAAACCATGGTTGCCGCTACCACTTGGACTTAAAGCTCCAGCTCTTGATAGCGTAATGGGTGAACTACATAAACAAGGAGTTTCAGATATTCCACCGTCGTCCGCTTGA 1284 0.4533 MLAVTPLRNTKDENQGEMESFSITTNDFGDLSDGNLLESINFDDFFVGINVDGDILPDLDMDSEMFAEFSASYGEESDINSSAINKTDEKNYSKNEEEEEEDKTIYLGRQGSEETVSKRNESVVVNPPLQKNGGGKGRKSSSQSKNTQGKRKVKVDWTPELHRRFVQAVEQLGVEKAVPSRILELMGIDCLTRHNIASHLQKYRSHRKHLLAREAETASWNQRRQVYGGVGGKREVMSPWPSAAAAPIIGFPPTPTPPPPMTPLHHHFRPLHVWGHPSMDQSFMHMWPKPHLQHSTRPQPLSWPPAAAPPPPHDPSFWHSHRQLTPNAIIPGTQCFSQHLTTVRSFGCPIPGGIPPHGMHKADQAIAAPGPAPFDFYPTKESIDTAIGDVLSKPWLPLPLGLKAPALDSVMGELHKQGVSDIPPSSA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02911 427 MobiDBLite consensus disorder prediction 89 108 - -
Tsu02g02911 427 MobiDBLite consensus disorder prediction 290 309 - -
Tsu02g02911 427 MobiDBLite consensus disorder prediction 110 127 - -
Tsu02g02911 427 SUPERFAMILY Homeodomain-like 150 209 IPR009057 -
Tsu02g02911 427 Gene3D - 149 210 - -
Tsu02g02911 427 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 206 IPR006447 GO:0003677
Tsu02g02911 427 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 427 IPR044825 GO:0003700|GO:0045893
Tsu02g02911 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 208 IPR017930 -
Tsu02g02911 427 MobiDBLite consensus disorder prediction 77 153 - -
Tsu02g02911 427 Pfam Myb-like DNA-binding domain 155 204 IPR001005 -
Tsu02g02911 427 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02911 Tsu-Chr2 32056175 32062103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02911 1 289 G2-like Transcription Factor Family AT5G44190 43.046 2.62e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g02911 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02911 - - jre:109001455 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02911 02 32056175 32062103 Tsu02g02911 02 32056175 32062103 ECH