Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02901 ATGCGAAACTCATCTTCACCATCACAATCtcaatcttcatcatcatcaatggTTATGAAACCAAAGAATGCCAACAATCTTAAAATCAAAAAGcctttcaataataataataataacaatgtaaCATCAACCGAGATTCACTTCAGAGGCGTTAGAAAGAGACCATGGGGCCGTTACGCCGCTGAGATTCGTGATCCCGGCAAGAAAAGCCGCGTTTGGCTCGGCACCTTCGACACAGCCGAAGAAGCAGCTAGAGCTTACGATGCCGCCGCTCGTCAGTTCCGCGGTCCAAAAGCCAAGACCAACTTTCCTCCACCATCCGACATGCCGGACGTTGTTAAAGAGGACAGTCCAAGCCAGAGCAGCACCGTTGAGTCATCCACACCTGAGCGTGAAATCACGCGCCCTCGTGAGGTTGTCAGCGGCGGTGGCGGTATCATGGATCGTTTTCCATTTCTCTCGATCCAGCAACAAATCATGCCATTTTCCGGCGCTGGTGTTGGTGCTATGAATGGAATGGTAACTGCTGTGAACCCGGTTTTCTTTTTTGATCCGGCGGCTCGAGCTGAGTTTGTGAACCAAAGGTTTTCTACCCGGTTTGAACCCGGTCCAGTTGAGTTTAATATCGGGTTTGGTGGTGGTGTCCAGAGCGATTCCGATTCGTCTTCTGTTGTTGATTGTCAGCCGAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAATggatgtttaa 738 0.4607 MRNSSSPSQSQSSSSSMVMKPKNANNLKIKKPFNNNNNNNVTSTEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPSDMPDVVKEDSPSQSSTVESSTPEREITRPREVVSGGGGIMDRFPFLSIQQQIMPFSGAGVGAMNGMVTAVNPVFFFDPAARAEFVNQRFSTRFEPGPVEFNIGFGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPMDV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02901 245 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 234 - -
Tsu02g02901 245 MobiDBLite consensus disorder prediction 114 129 - -
Tsu02g02901 245 MobiDBLite consensus disorder prediction 1 42 - -
Tsu02g02901 245 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Tsu02g02901 245 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 CDD AP2 47 104 IPR001471 GO:0003700|GO:0006355
Tsu02g02901 245 PANTHER ERF FAMILY PROTEIN 33 234 - -
Tsu02g02901 245 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Tsu02g02901 245 MobiDBLite consensus disorder prediction 95 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02901 Tsu-Chr2 31918683 31920025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02901 19 243 AP2-EREBP Transcription Factor Family AT5G44210 44.017 3.36e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g02901 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02901 K09286 - qsu:112001675 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02901 02 31918683 31920025 Tsu02g04350 02 52074781 52075889 ECH
Tsu02g02901 02 31918683 31920025 Tsu02g02901 02 31918683 31920025 ECH
Tsu02g02901 02 31918683 31920025 Tsu08g04048 08 58724435 58725698 ECH