Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02900 ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAACAACTTCTTCTTTCCCTCAAAAAATCTCTCACTCTCAGAGATACCAATATGATCGACAACATCCCACCAAGGAAGCTACTCACCCGCCGACAACCACCCACCACCGCCGACATGTTTTCCGATGATGATCCATATTCCTCCGATCACTTCCGAATGTACGAGTTCAAAATCCGGCGATGCACACGGAGCCGGAGCCACGACTGGACAGACTGCCCTTTCGCTCACCCGGGCGAAAAGGCCCGCCGTCGTGACCCCCTTAGGTTTCAATACTCTGGTGAGGTGTGTCCTGATTACCGCCGCGGAAATTGCGAACGTGGCGATGCGTGTGAATTTTCCCATGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGCGAAAAATTTGCTTTTTTGCTCATACACCCCGTCAACTAAGAGTTTTGCTATTACCACCCCCTCCTTCTCCTACAcctcaaaacaacaaaaattgttgtTCTTTTTGTCACTGCtgttcaaattcttcatcttcttcatcacccACTTCGATTTTGTTAAGTGGGccacatttttcttcttcaaattcacCACCTTTATCACCTTTGTCAAATTCAAATTCCAAGGATGTGCATGTTCTTAACGAGCTTATTCGATCTATggaaaatttcaattttggtgATGAAATTCTTCATGAGGTTAATTCACCTGTTTCTGCTTCAAAATTGAATtggattaataataataatagtccAAATTCTTCATTGGATTGTGGAAAATATTATAATTCAAGTGGTAGTGAGAACTTTTTGAGTGAAGAACAGAGGACTaaggttgttgttgatgatgatgttgttgctAACCCAGATTTTGGGTGGGTGAATGAATTGCTGATGTAG 942 0.3684 MSSVLCEEQQKQLLLSLKKSLTLRDTNMIDNIPPRKLLTRRQPPTTADMFSDDDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCERGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSPTPQNNKNCCSFCHCCSNSSSSSSPTSILLSGPHFSSSNSPPLSPLSNSNSKDVHVLNELIRSMENFNFGDEILHEVNSPVSASKLNWINNNNSPNSSLDCGKYYNSSGSENFLSEEQRTKVVVDDDVVANPDFGWVNELLM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02900 313 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 125 IPR000571 GO:0046872
Tsu02g02900 313 Gene3D - 98 163 - -
Tsu02g02900 313 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Tsu02g02900 313 PANTHER UNKEMPT FAMILY MEMBER 45 312 IPR045234 -
Tsu02g02900 313 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 45 312 - -
Tsu02g02900 313 SUPERFAMILY CCCH zinc finger 101 125 IPR036855 GO:0046872
Tsu02g02900 313 SMART c3hfinal6 100 126 IPR000571 GO:0046872
Tsu02g02900 313 SMART c3hfinal6 135 158 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02900 Tsu-Chr2 31887832 31889025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02900 52 261 C2H2 Transcription Factor Family AT5G07500 40.566 1.07e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g02900 zf-CCCH 6.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02900 K23047 - pvu:PHAVU_011G125300g 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02900 02 31887832 31889025 Tsu02g02900 02 31887832 31889025 ECH