Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02893 ATGTCGCTGCAGACTCTGAAAGAAACACTCAGACATTGCACAACCCAACAATCACaaccatcttcttcttcatcccaATCCATCTGCGATTTCGATACACACTTCCCAATTCACAGAAAACCCCCAAAATCCTCTCTTGCCCAACAGCTTCGCCTCTTTGATTACCCTGATGACCCACCCTTTGAGCCTCAAAATTTCCCTTCCCAACAAAACGACTCCAAAACCCAACAACAAAACCTAGAAgatgaggaggaggaggaagaagaagtagtagaagaagaagatgatgatgatgaagagccAGAGATAAAGAGGGTGAAATTCAGTTCAACCAAATCGTCTCAGTTTCAATTTGATCATACTGGACCCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAAGTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTTTATGATTTGTACAAGAACAATCATGGGGGCATCCTTGGAGATGACATgGGTCTTGGAAAGACTATTCAAACAATAGCATTTCTTGCTGCCATATATGGTAAAGAAGGAGACTCCGTTCTAACTGAGAAGCGAGTGGAGAAAAGAAACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTTCCATTTATCACGGTGCAAACCGTGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCAGCAGTTCCTTGTCAGATATTCAGTGGAATATTGTGATTATTGATGAGGCTCATCGACTTAAGAATTGGAAATCAAAACTCTATAATGcatgtttaaaaattaaaaccctGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTCGGAACACGGGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTTCAAATAGCTAATAAGAGAAAACAACACCTTGTTGCGGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAAACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTACAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAATAAGGACCGGCCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGACGGTACCAAATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTGGAGGATGGATGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTATCAAGCTACAACAGATAAGCAATCACCTTGAGTTGATTAAGCCAAACCCCAAAGATGACCCtgagaaacaaattaaagatgCAAAGTTTGCTGCTGCTGTCTACGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAGAGTTTCCTGAGTCTAAGTGATACAAAACATTGTGGGAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCAAATGGAGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGTTGAACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAgtgTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTGGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGATAGGTCCTTTCGATTTGGACAGAAACGACATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAATTTATTCTCGTCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGAATTTAAAGGGGAGCTTTTTGgaatttgcaatttatttcGAGATTTATCTGATAAACTATTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAAAAGACGACGGGCTTAAAACAGAACAacaggaaaaaataaatatttcagaagAAACAAGTTTATTAGACACAGAGCCTGAAACCAGGTTATGTTCTGAAGCTGTGCGGACTACAACAAGTAAACCAGATATCGAATTTGAAGACCTCGGCATAGTTTACACTCATCGCAATGAAGACATTGTCAACTCCCGACCAGTGATTCAAGGGCGGTTTTCTTCCAGCAGCACCCCTTCAAGTGATGATGACTTAAGCAGGCCAAGCATCTCTGTAGtctataaaaaggaaaaacCAGATTGTGtacctaaaaaattaaaagttactTTGGTTAATGAAAGAAAGAGAGCACAGTTTAGCCTCCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACtccaaaagagagaaaaaaagtgCTTATagaatataagaagaaaaagactAAAGGTTGA 2679 0.3751 MSLQTLKETLRHCTTQQSQPSSSSSQSICDFDTHFPIHRKPPKSSLAQQLRLFDYPDDPPFEPQNFPSQQNDSKTQQQNLEDEEEEEEEVVEEEDDDDEEPEIKRVKFSSTKSSQFQFDHTGPFEPLVLSSDGEVPLVQVPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIYGKEGDSVLTEKRVEKRNPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGSSSLSDIQWNIVIIDEAHRLKNWKSKLYNACLKIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDRPCSCGSPLTQVECCKRTVPNGAIWPYLHKDNLEDGCDSCPFCIVLPCLIKLQQISNHLELIKPNPKDDPEKQIKDAKFAAAVYGPDIDLVGGSMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLNILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKKDDGLKTEQQEKINISEETSLLDTEPETRLCSEAVRTTTSKPDIEFEDLGIVYTHRNEDIVNSRPVIQGRFSSSSTPSSDDDLSRPSISVVYKKEKPDCVPKKLKVTLVNERKRAQFSLLAESMGMGELAFSKWLLSATPKERKKVLIEYKKKKTKG 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02893 892 Pfam SNF2-related domain 164 422 IPR000330 GO:0005524|GO:0140658
Tsu02g02893 892 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 38 878 - -
Tsu02g02893 892 CDD SF2_C_SNF 533 662 - -
Tsu02g02893 892 SMART helicmild6 568 651 IPR001650 -
Tsu02g02893 892 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 695 IPR001650 -
Tsu02g02893 892 PANTHER SNF2/RAD54 FAMILY MEMBER 38 878 - -
Tsu02g02893 892 MobiDBLite consensus disorder prediction 79 100 - -
Tsu02g02893 892 Gene3D - 394 760 IPR027417 -
Tsu02g02893 892 Pfam Helicase conserved C-terminal domain 539 651 IPR001650 -
Tsu02g02893 892 SMART ultradead3 144 340 IPR014001 -
Tsu02g02893 892 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g02893 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 707 IPR027417 -
Tsu02g02893 892 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 332 IPR014001 -
Tsu02g02893 892 Coils Coil 73 100 - -
Tsu02g02893 892 MobiDBLite consensus disorder prediction 1 103 - -
Tsu02g02893 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 382 IPR027417 -
Tsu02g02893 892 Gene3D - 127 381 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02893 Tsu-Chr2 31799190 31805419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02893 593 694 RAD5 or RAD16-like Gene Family AT3G16600 38.235 1.21e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu02g02893 SNF2_N 6e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02893 K20098 - gmx:100781003 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02893 02 31799190 31805419 Tsu02g02893 02 31799190 31805419 ECH