Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02865 ATGGGAACGCGACCGCAGCAATCATGTATAGATGAAGAGGATGAGGAATTGCTGGGTTGTGGAACTACGATTTCGGGTCAATCAGGCTCGACGAGCAGGAGTGCCGGGTTGCCGTCTAGCCGGAGTGAGCAGACGACGGGGACAGTTGCTGGTAATAATGCTGCTCTCAAATTGAATCATCTTGATATACATGATGATGATGCTGCTTCACAGGGAGTGGTTGCtagcaagaggaagaagagaggcCAACGGGCTGCTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGgTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGTTATGACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTCTATGATGCGCTGAACGTTCTCATGGCTATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAATGATATTGAAGAACTAAAGAAAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCAGCGTATCTGCAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAACCTTATTCAACGCAATGAGCAATTATATTGTTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGacACGTCCTCATGCAATTGTCGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAATTTTGGTGAGAGTGAGAGACCACAGAGTGACAGTGTTACACACAATATTCCGGATGGAGCGGAAGGTTCTAGCATGTCAGGCATGTATCAGTCACAGGTTCCTCATTCAGTTTCAAACATGTCAGTTAGGCCTCCCACATCACCTCCACTCCCTGGAATATTGAAGGCAAGAGTTAAGCAAGAGCATTGA 1035 0.4329 MGTRPQQSCIDEEDEELLGCGTTISGQSGSTSRSAGLPSSRSEQTTGTVAGNNAALKLNHLDIHDDDAASQGVVASKRKKRGQRAAGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGVMTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKKERLGLRNRIERKAAYLQELEEQFVGLQNLIQRNEQLYCSGNPPSGGVSLPFILVQTRPHAIVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFGESERPQSDSVTHNIPDGAEGSSMSGMYQSQVPHSVSNMSVRPPTSPPLPGILKARVKQEH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02865 344 CDD DP_DD 178 281 IPR014889 -
Tsu02g02865 344 PANTHER TRANSCRIPTION FACTOR DP 19 344 - -
Tsu02g02865 344 MobiDBLite consensus disorder prediction 286 325 - -
Tsu02g02865 344 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Tsu02g02865 344 SMART DP_2 180 342 IPR014889 -
Tsu02g02865 344 Pfam Transcription factor DP 181 286 IPR014889 -
Tsu02g02865 344 Coils Coil 189 223 - -
Tsu02g02865 344 MobiDBLite consensus disorder prediction 286 344 - -
Tsu02g02865 344 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Tsu02g02865 344 Gene3D Transcription factor DP 179 315 IPR038168 -
Tsu02g02865 344 SUPERFAMILY E2F-DP heterodimerization region 180 287 IPR037241 -
Tsu02g02865 344 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Tsu02g02865 344 PIRSF Txn_factor_DP 5 344 IPR015648 GO:0005667|GO:0051726
Tsu02g02865 344 Gene3D - 85 178 IPR036388 -
Tsu02g02865 344 MobiDBLite consensus disorder prediction 20 47 - -
Tsu02g02865 344 PANTHER TRANSCRIPTION FACTOR DP 19 344 IPR015648 GO:0005667|GO:0051726
Tsu02g02865 344 MobiDBLite consensus disorder prediction 21 47 - -
Tsu02g02865 344 MobiDBLite consensus disorder prediction 70 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02865 Tsu-Chr2 31255658 31259733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02865 80 281 E2F-DP Transcription Factor Family AT5G02470 53.922 8.38e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu02g02865 DP 9.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02865 K04683 - qsu:112000390 528.865