Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02863 ATGGGAACGCGACCGCAGCAATCGTGTGTAGAcgaagaggatgatgaatttCTAGGTTGTGGAACTACCATTTCTGGTCAATCTGGTTCAACAAGCAGGAGTGCTGGGTTGCCGTCTAGCCGGAGCGAACAGACAATTGCGACATCCGCTGGTGATAGCGCTGCTCTCAAAATGAACAATCTTGATATACAGGATGATGATGCTGGATCACAGGGAGTAGTTGCTagcaagaagaaaaagagaggcCAACAAAGGGCTGCGGGAGGTGATAAAAGTGGAAGAGGGCTTCGACAATTTAGCATGAAAGTTTGTGAGAAGGTAGAAAGTAAGGGAAGAACAACTTACAATGAGgtGGCAGATGAACTTGTGGCTGAATTTGCTGATCCAATCAATAGTGTTTTGTCCCCTGATAAGCAACAATATGACGAAAAAAACATTCGACGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAGGGGTCTTCCTCGTACCAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAATCATCCTATCTGCAGGagcttgaggaacaaTTTGTAGGTCTTCAGAACCTTATTCAACGGAATGAACAGTTAAATAGCTCTGGAAATCCTCCCAGCGGAGGTGTATCCTTACCTTTTATTTTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTtgttcattttgattttaatagTACTCCATTTGAGTTGCATGACGACAATTATGTGCTCAAGGCAATGGAATTTGGTGATAGACCACAGAGTGATACTGTTACGACCAATGTTATAGATGGAGGGGAAGGTTCTAGTATGTCAGGCATGCATCAGTCACAGGTTCCTCCTTCCGCTTCAAGCGTGTCGATTAGGCCTCCAACATCACCCCCACTCCCTGGAATATTAAAGGCAAGAGTCAAGCAGGAGCATTGA 1032 0.4109 MGTRPQQSCVDEEDDEFLGCGTTISGQSGSTSRSAGLPSSRSEQTIATSAGDSAALKMNNLDIQDDDAGSQGVVASKKKKRGQQRAAGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRNRIERKSSYLQELEEQFVGLQNLIQRNEQLNSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQSDTVTTNVIDGGEGSSMSGMHQSQVPPSASSVSIRPPTSPPLPGILKARVKQEH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02863 343 MobiDBLite consensus disorder prediction 21 55 - -
Tsu02g02863 343 PANTHER TRANSCRIPTION FACTOR DP 22 343 - -
Tsu02g02863 343 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Tsu02g02863 343 MobiDBLite consensus disorder prediction 1 94 - -
Tsu02g02863 343 MobiDBLite consensus disorder prediction 288 343 - -
Tsu02g02863 343 Gene3D Transcription factor DP 180 312 IPR038168 -
Tsu02g02863 343 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Tsu02g02863 343 SMART DP_2 181 341 IPR014889 -
Tsu02g02863 343 Pfam Transcription factor DP 182 296 IPR014889 -
Tsu02g02863 343 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Tsu02g02863 343 Coils Coil 190 224 - -
Tsu02g02863 343 PANTHER TRANSCRIPTION FACTOR DP 22 343 IPR015648 GO:0005667|GO:0051726
Tsu02g02863 343 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Tsu02g02863 343 PIRSF Txn_factor_DP 4 343 IPR015648 GO:0005667|GO:0051726
Tsu02g02863 343 Gene3D - 86 179 IPR036388 -
Tsu02g02863 343 MobiDBLite consensus disorder prediction 288 321 - -
Tsu02g02863 343 CDD DP_DD 179 282 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02863 Tsu-Chr2 31208846 31212641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02863 63 283 E2F-DP Transcription Factor Family AT5G02470 51.339 1.16e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu02g02863 DP 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02863 K04683 - jre:108980577 533.487