Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02855 ATGTCAAACATGCATTACATTTTTAGCATGTTatcatttcttcttcttgtaGAAAATCTCAGCACAATTCATTGTCATACAAAGGGAATTCGACAAAAACATTCTTCAGGAAACAATTTATCCATCAACAATACAACAAGAACGGAGTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTTAAACACTCAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTAGGAGATTTTGCAACAATTCAAGAAGCCATTGATTCTCTTCCTTCTATAAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGTGTTTACGCGGAGAAAGTTAACATTCCTCCATTAAAATCCTTCATATCCATAGAAGGAGATGGAGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGAATCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAAAATATCACATTCCAAAACACTTTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTAGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGATGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATCTTTGGCAATGCTCTCTCCTTATTTGAGGGATGTCACGTGCATGCAATAGCTAGAAATACAGGAGCATTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTGAACTGTAAAGTAACAGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTATCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGATCAAACTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTAGACCTTTTCTTTCACTTACTTTTATTGATGGGACTGAATGGATCAATTTTTAG 1146 0.3691 MSNMHYIFSMLSFLLLVENLSTIHCHTKGIRQKHSSGNNLSINNTTRTELAEQQFMKWVSFVGGLKHSVFKTAKNKLFASYTLHVDKNPSLGDFATIQEAIDSLPSINLVRVVIKVHAGVYAEKVNIPPLKSFISIEGDGADTTIVQWGDTAQTPGPRGNPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGSNFAGRVSWSRELTDEEARPFLSLTFIDGTEWINF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02855 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 380 - -
Tsu02g02855 381 Gene3D - 78 381 IPR012334 -
Tsu02g02855 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Tsu02g02855 381 PANTHER PECTINESTERASE 7 380 - -
Tsu02g02855 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Tsu02g02855 381 Pfam Pectinesterase 92 375 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02855 Tsu-Chr2 31046339 31050500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02855 43 379 Carbohydrate Esterase AT5G47500 43.491 3.06e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02855 K01051 - gmx:100793314 664.455