Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02844 ATGACAGCTGGGAGCGTGAATTACGTATTACCACCATTCTTGAGCAAAACCTATGATATGGTTGATGATTCTTCAACCAACTCTATCCTTTCATGGGGTAAAAACGACAACACCTTTGTCGTTTTCAGTGCCGCCGATTTCTCCAAACACATCTTACCCAAATATTTCAAGCACAATAACTTCTCCAGCTTCGTCAGGCAATTGAATACCTACGGTTTTAGAAAGGTTGACCCTGATCGCTGGGAATTTGCACATGAAGGATTTTTAAGGGGTCAAAAACAATTGTTGAAGACTATCACTAGGAGGAAATCTATAAATGCAAATGGTAATAGTCAGCAACCATCTAAGGTGCAGAACCCACCTGTTGGGTCATGTGTTGAAGTGGGGAAGTTTGGGATTGACGAAGAGGTTGAAAGACTGAAACGAGATAAAAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAACAAACGACCGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCGTTCCTGGCAAAGGCCATGAATAGTCCGGGCTTCATGGCTCAATTTTCACAGCAGCAGAATGAAAATAATAGACATGTTACCGCAGTTAAAAAGAGGCGGCTTCAAAGACAGGAAGAAGATAATTTAGCCACCAAGAATCCGCACAATCCTCTTGATGGACGTGTTGTCAAGTACCAGTCTTCGGTTAATGAGGCTGCTAAAACATTATTTAACCAGATATTGCAACTGAACAATTCTACAAGGATGGACTCGTCCATTAAGAACCTTGATGCATTCCTTATTGATGATATTCCTTCAGCCATTCCATTAGATAGCAGTAGTTCCTCCACCCAAGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGGCAGTCGTGCATGGCAGTAGAATCTCAATTTCCTGTTAGTTGTATGACCAATAGCATGTCTGAGGTACAATCTTCACCTGCTGTGTTGACTGACTGTGTCAAAGCAGCTGAGTTTCATGAATTAGCAGCAGCACATAACTGTCAAGACAATGTTTTGGATTTTGGTAAAGTTGAAGGGATGGCTACAGAAAACAGCTTTGTGAATCCTAATCAAAATTTTGTGGGGTCTGTCAGTGAGAATGACGAGGAATTGGACGTGATATCAGCTGTTTTGAATGGGACACAGTCCTTGGAAGCTGATGCTTTTTCTCCTGATGGAAATGAAATTTCTACGCTTCCAGCAATCAATGATGAATTATGGGAACTGTTTTTTAGGCCAAGCCCACTAACTGGAGACACAGATGAAGTTAAAGGTAGCTGCTCTCTAGGATATGGTTTGACTAAGGACCAGGAATTGTCATTAGACAAGGAGATTCAACAAGAAAAGATGGACAAGAAACAACATATGGACCATCTTACTCAACAAATGGAACTTCTTGCATCAGACTCATCGTTGTGTATataa 1491 0.4138 MTAGSVNYVLPPFLSKTYDMVDDSSTNSILSWGKNDNTFVVFSAADFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKQLLKTITRRKSINANGNSQQPSKVQNPPVGSCVEVGKFGIDEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQNVGQRVQVMEQRQQQMMSFLAKAMNSPGFMAQFSQQQNENNRHVTAVKKRRLQRQEEDNLATKNPHNPLDGRVVKYQSSVNEAAKTLFNQILQLNNSTRMDSSIKNLDAFLIDDIPSAIPLDSSSSSTQVSGVTLSEVPPISGQSCMAVESQFPVSCMTNSMSEVQSSPAVLTDCVKAAEFHELAAAHNCQDNVLDFGKVEGMATENSFVNPNQNFVGSVSENDEELDVISAVLNGTQSLEADAFSPDGNEISTLPAINDELWELFFRPSPLTGDTDEVKGSCSLGYGLTKDQELSLDKEIQQEKMDKKQHMDHLTQQMELLASDSSLCI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02844 496 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g02844 496 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 6 465 - -
Tsu02g02844 496 Gene3D - 6 103 IPR036388 -
Tsu02g02844 496 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Tsu02g02844 496 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 465 IPR027725 -
Tsu02g02844 496 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g02844 496 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g02844 496 Coils Coil 137 157 - -
Tsu02g02844 496 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g02844 496 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g02844 496 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02844 Tsu-Chr2 30839147 30841966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02844 10 492 HSF AT5G16820 49.393 8.22e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu02g02844 HSF_DNA-bind 4.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02844 K09419 - gmx:100793665 523.087