Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02832 ATGGGGAGAGCACCATGTTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATAGAATATTGGTGGATCACATTTTGAAACATGGCCATGGAAGTTGGAGAGCACTTCCAAAGTTAGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGATTAAGGTGGACTAACTATTTAAGACCTGATATCAAAAGAGGAAAATTCACTGAGGAAGAAGAGCAAACCATCATCAATTTACATGCTGTTCTTGGGAATAAgtgGTCAGCTATAGCAGGTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACGCATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCAGTCACTCATCGTCCAAGAATTGATCATCTCAATCTTATCACAAAtcttcaacactttcttcttGCTGCAAATGTTCTCAATAATTTTTCAAACACTTTGGACATAACAaatacttataataataatgctCTAAAACTTCAAACTGATGCAGCCAAATTCCAATTGCTTCAAAACATGCTTCAAATTCATGCCAACAATATTACTCCTCCTATCAATCCATTTGGAcagtcatcatcttcatcacacCAAGAAAATTTTCTAAATGAAGTTTTAGGATTGAATAATCAGTCcaattttctttctcaaaattATCATACAAATTTTCAAGGCTTTGAAATGCCTCAGATGCAGAATAATGGTGGCAGCAGCAATAGTAGCAGTTGCTTGAATCAAAATGTTGATGAAGTATTTGATGCTACAAATTCTTCTTTAAATTCCCTTCCAAATTTGGTTTCGCTTTCGCCAGAATATTCTGCTGTGATGGAAAACAAGGTAAACCAAAATGAGAGTTCTGATccttcttcaacttcaacaacCTTTGAAATGTTGGGAGATTTCATGTATGAGGATTTAACCATAGATGCTTGTTGGAAAGATCTCTTAGACCAAGAAATGAAGCCATAG 993 0.3283 MGRAPCCDESGLKKGPWTPEEDRILVDHILKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEQTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLITNLQHFLLAANVLNNFSNTLDITNTYNNNALKLQTDAAKFQLLQNMLQIHANNITPPINPFGQSSSSSHQENFLNEVLGLNNQSNFLSQNYHTNFQGFEMPQMQNNGGSSNSSSCLNQNVDEVFDATNSSLNSLPNLVSLSPEYSAVMENKVNQNESSDPSSTSTTFEMLGDFMYEDLTIDACWKDLLDQEMKP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02832 330 CDD SANT 69 112 IPR001005 -
Tsu02g02832 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 327 - -
Tsu02g02832 330 CDD SANT 16 61 IPR001005 -
Tsu02g02832 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g02832 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g02832 330 Gene3D - 69 116 - -
Tsu02g02832 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g02832 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g02832 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu02g02832 330 PANTHER MYB TRANSCRIPTION FACTOR 3 327 - -
Tsu02g02832 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu02g02832 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g02832 330 SMART sant 13 63 IPR001005 -
Tsu02g02832 330 SMART sant 66 114 IPR001005 -
Tsu02g02832 330 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02832 Tsu-Chr2 30679780 30681830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02832 1 325 MYB Transcription Factor Family AT5G16770 49.713 9.54e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g02832 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02832 K09422 - gmx:547488 412.149