Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02822 ATGAAAGATCTTTGTAGAAATTTCCAGCGAGGCAGTTGTCAATATGGAGACAGGTGTAGATttcttcatcaacaacaacaacaacaacagcgaAAATCTAATAATGGTTTTGgaggacaacaaaatacaaaccCTTTTGGATTTGGGTCTGCCTCTGCTTCTGCTTCTGCCCCCAATAACCATCAAAAGACCAACCCTTTTGGTTTTGGAACTCAAAACACCAATGGACCTCCTCGTTCTGATTCCAAACCTAACCAATTTCAGCCTTTGGAAAACAAATGGACTCGATCTTCATCCAAACCACAGAATGGCACTCCACGTCAGTCGGATAACAATTCCCAATCAGTGAATCATAAATGCACAGATCCTGAGGATTGCAAGCGCCAGATTGTAGAAGATTTTCAGCAAGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAggTGCTCCTTGTGACATTCTTGGAGATATTAGCTATGAAGAATTACGAGCAGCGGCTTATGAGGATGCCAGGAATGGAATGAGTTTGCCATTAATTGTtgagaaagagagaaacataCTAACATCCAAGTTGGCTGAGTTTGACAAACTACTTTCTGAACCCTACAAAATGCCTCTGAATTCTtctcttggagccaatgcaaATATATTTTCACCAGCCACTCAAAACTACCAATCTAATGGAGCCAATGCAAATGCATTTTCACCAGTCACTCAAAATTACCAATCTAATGGAGCCAATGCAAATGCGTTTTCACCAGCCACTCAAAACAATGGTCCTTTAGCAGTCTCGAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGTTTTGAAAGGCCCTCTGCACCACAAATGAGCACTCCAGCGCAGCCTAACTCCTTTGGAAATGGAGGAAACTTTTTCGGATCCAACACACAAAATATATTCGGCAGTGGAATCTCAGGTGCTCAAAGCAACCCCTTTTCTAAACCAGCGGAGTTTACAATGTTTCCAGGTTCAACTTCACAGTTCCAACAACCATCCACTGCGTTCAATAACACTAGCTCCACTACAATGCTTCCAACAACATCAGCTGTTCAGCTAAACACGTCCCAAGTGGAGACTGCGTCCGTAGATGAAAGTATCTGGTTAAAGGAGAAATGGATTCCTGGAGAGATTCCAGAAGTAGCTCCTCCAGATAGATTTATTCAGGATGTGAAATAG 1212 0.3927 MKDLCRNFQRGSCQYGDRCRFLHQQQQQQQRKSNNGFGGQQNTNPFGFGSASASASAPNNHQKTNPFGFGTQNTNGPPRSDSKPNQFQPLENKWTRSSSKPQNGTPRQSDNNSQSVNHKCTDPEDCKRQIVEDFQQEKPLWILTCYGHCKGAPCDILGDISYEELRAAAYEDARNGMSLPLIVEKERNILTSKLAEFDKLLSEPYKMPLNSSLGANANIFSPATQNYQSNGANANAFSPVTQNYQSNGANANAFSPATQNNGPLAVSSFSQLGASLNTGFERPSAPQMSTPAQPNSFGNGGNFFGSNTQNIFGSGISGAQSNPFSKPAEFTMFPGSTSQFQQPSTAFNNTSSTTMLPTTSAVQLNTSQVETASVDESIWLKEKWIPGEIPEVAPPDRFIQDVK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02822 403 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Tsu02g02822 403 MobiDBLite consensus disorder prediction 24 119 - -
Tsu02g02822 403 PANTHER MAKORIN-RELATED 2 398 IPR045072 -
Tsu02g02822 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 398 - -
Tsu02g02822 403 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Tsu02g02822 403 MobiDBLite consensus disorder prediction 277 296 - -
Tsu02g02822 403 MobiDBLite consensus disorder prediction 24 122 - -
Tsu02g02822 403 Gene3D - 1 68 - -
Tsu02g02822 403 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Tsu02g02822 403 SMART c3hfinal6 2 25 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g02822 zf-CCCH_4 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02822 K14321 - gmx:100814339 456.832