Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02812 ATGCACCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATCGACAACAATGGTGTTTTAAAGATTGCCGATTTTGGTTTGGCAAATGTTTTTGACTCCCATCACAATATTCCATTGACTAGCCGTGTAGTAACTCTGTGGTACAGACCACCTGAACTTTTACTTGGAGCGAATCATTATGGGGTTGCAGTGGATTTATGGAGCACTGGTTGTATACTAGGGGAACTATATACAGGCCGGCCCATTTTGCCTGGAAAAACTGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCATCTGAGGACTATTGGCTTAAGTTACGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCGGATACGTTTAAGGAATATTCATCAACTGCTCTTAAGCTTATAGAGACCCTACTTTCTGTAGACCCGTCACAACGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTCACATCAGAACCTTTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAGGAGATTGACGCTAAAATGCGTGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGAGAGGGAGAAAAAAGTTGGCTCAGCGGCTAGACAAGAAAAAGGACCTAGGGCCGTTGTCTCAACAAAAGACAACGCTGACTTGGGTGCATCAATACAGCAAGTGAAACATCATTCCATCTCAAAGAACCGAAGCGAATTGTCGTATCCTCATAGAGAACACGTGTCCGGGAATCAAGGTTTCCCACACAGACAATCAGATGTTaaagaaacagaaaataatttatCTGGCCACTTTTATCGGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGCCCAGGGGCGTGAAGGAAGTTGATAATGGGCCTCCTGTTTCAAACAGAGTGAACCTAGCAAAACTATCCGGGCTTGTAGCATCTAGGACTTTGTTGTCTGAAGATCAGGAGCCAAAACCAGTTCCCTTTCTCCACAGAAAACCAATTGAAGTAAGAAGATCCGTAGAAGCGACTAATGGATCTGAGTCAAGAAGAAGGCGGGATAAAAAACGAATCGTTGATCACAGTCAAATTGTAAATAGAAGAGTCCCAACCGAAAAATCAACTCCGGATGGACATGGATCCAGCGGAAACAAGATATACATGTCAGGTCCATTACTGGCTTCAAACAATATGGATCAGATGCTCAAAGACCATGATCGTAAGATCCAAGAGTTTTCAAGACGAGCAAGAGGTGAGAAAGTACGCACACAGAGAAAGTAG 1359 0.4408 MHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVADTFKEYSSTALKLIETLLSVDPSQRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEATRRQGAVGEREKKVGSAARQEKGPRAVVSTKDNADLGASIQQVKHHSISKNRSELSYPHREHVSGNQGFPHRQSDVKETENNLSGHFYRRPSHSGPLVPGSGWPRGVKEVDNGPPVSNRVNLAKLSGLVASRTLLSEDQEPKPVPFLHRKPIEVRRSVEATNGSESRRRRDKKRIVDHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASNNMDQMLKDHDRKIQEFSRRARGEKVRTQRK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02812 452 MobiDBLite consensus disorder prediction 199 228 - -
Tsu02g02812 452 MobiDBLite consensus disorder prediction 401 422 - -
Tsu02g02812 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Tsu02g02812 452 MobiDBLite consensus disorder prediction 366 452 - -
Tsu02g02812 452 MobiDBLite consensus disorder prediction 184 237 - -
Tsu02g02812 452 SUPERFAMILY Protein kinase-like (PK-like) 1 188 IPR011009 -
Tsu02g02812 452 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g02812 452 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g02812 452 MobiDBLite consensus disorder prediction 366 393 - -
Tsu02g02812 452 PANTHER CELL DIVISION PROTEIN KINASE 1 443 - -
Tsu02g02812 452 PANTHER CYCLIN-DEPENDENT KINASE 1 443 - -
Tsu02g02812 452 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g02812 452 Gene3D Transferase(Phosphotransferase) domain 1 1 218 - -
Tsu02g02812 452 MobiDBLite consensus disorder prediction 426 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02812 Tsu-Chr2 30421346 30424226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02812 1 221 Core Cell Cycle Gene Families AT5G10270 52.703 1.02e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu02g02812 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02812 - - gmx:100807590 710.679