Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02809 ATGGAAGTTGTTGATGAGAATGGACAACTTATTATTGAAGAAAACAGAGAGCATGTAGTTGTTTCACATGTTAACAATGATTCACATGTTAGTGATTCAAATGCTAATGAAAGTCAAGAACCATACATAGGAATGAAATTTGAGTCACAAGAAATTGCTTATTCATTCTATGCTGACTATGCAAAATTTAATGGGTTTGGGATTTCCATCAAAACTAGTCGCCGTTCAAAGGTTTCTAAAGAATTTATTGATGTAAAATATGTTTGCACGAGGTATGGAAAAAAGCGAGAATCCTCTGCAATTAATCCACATCCTTGTTTAAAAGTGGAATGTGAGGCTTACTTGCGTATAAAAAGAAGACAACCAATTTATGCATCATTGGTCAAACAACATGGTGGATATGAAAATATTGGTTGCTTGGAGAAGGATGTTAGAAATCATTTAGATAAAAGACGTCGTTTATCTTTAGAATTAGGCGATGCAAATGCAATGTTGGAGTGTTTTATGGCTATGCAAGAAGAAAATCCAAGATTCTTTTATGCAATTGATTTGGATGATGAGAATCGTGTGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGATTATCAAGTGTTTGGTGATGTGATATCATTTGATACAACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAGTCAAGGCTACTTGGTTGTGCATTACTAGCGGATGAAACCTCAAATACTTTCATATGGTTGATGAAAACATGGATTAGAGCAATGGGTGGAACTCCTCCAAATGCAATAATAACTGATCAAAACAGAGCAATGAAAGTAGCTATAAGAGAGGTCTTTCCAAATACACGACATCGTTTTTGTCTTTGGCATATACTTAGAAAGGTGCCTCAGAAGCTTAGTCATGTGTTACGAAATAATGAAGACTTCAAGAAACATTTGACTTCATGTATCTATAGGTCTTGGTCAAAAAAGCAATTTGAAGATAAATGGCAAGAAATGGTAGAAAAGTTCCAGCTGTTGGAGGATGAGTGGCTTCAGTCTTTGTACAAAGAACGTGAACATTGGGTTCCTATTTACATGAAGGATACATTTTTTGGTGGCATGTCTACAACTCAGAGATCGGAGAGCATCAATTCgttttttgacaaatatgtATGTAAGAAAACTACATTAAAGgaatttgttgaaaaatataaagttgCTCTGCATGATAGAGAAGAGGCAGAAAGGCAAGCTGATTTTAATACATGA 1281 0.338 MEVVDENGQLIIEENREHVVVSHVNNDSHVSDSNANESQEPYIGMKFESQEIAYSFYADYAKFNGFGISIKTSRRSKVSKEFIDVKYVCTRYGKKRESSAINPHPCLKVECEAYLRIKRRQPIYASLVKQHGGYENIGCLEKDVRNHLDKRRRLSLELGDANAMLECFMAMQEENPRFFYAIDLDDENRVKNVFWVDAKGREDYQVFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLADETSNTFIWLMKTWIRAMGGTPPNAIITDQNRAMKVAIREVFPNTRHRFCLWHILRKVPQKLSHVLRNNEDFKKHLTSCIYRSWSKKQFEDKWQEMVEKFQLLEDEWLQSLYKEREHWVPIYMKDTFFGGMSTTQRSESINSFFDKYVCKKTTLKEFVEKYKVALHDREEAERQADFNT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02809 426 Coils Coil 401 421 - -
Tsu02g02809 426 Coils Coil 333 353 - -
Tsu02g02809 426 Pfam MULE transposase domain 210 303 IPR018289 -
Tsu02g02809 426 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 123 426 IPR031052 GO:0006355
Tsu02g02809 426 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 122 IPR031052 GO:0006355
Tsu02g02809 426 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 21 122 - -
Tsu02g02809 426 Pfam FAR1 DNA-binding domain 55 121 IPR004330 -
Tsu02g02809 426 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 123 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02809 Tsu-Chr2 30392968 30394396 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g02809 MULE 6.5e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02809 - - dzi:111309578 578.941