Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02768 TGTGAAGAGGTTAAGGAAGCTCAGGGTTGTGCTGATGGAAATGAATATTCTGAGGTAGATGGTGAGACGAGGGAGCTTCGAGAAGTAGAGTCAGATGTTAAGCGCATATATACGGAAGCTGATGGTGGTTGTGGTAATTTGAGTTGTGCCTCTGATGCTATCAAATTGGAGGAACTTCATGTTTCGGCCGGGAATGTAGCTGAAGAAGGTTTGATCGAGGGAAAGGAAGGTCATGATGGCAAAGAAAATGTGGTGGCTATTGACTCTCTTCGGGTTTCGGATGGTGTTTCTGTTATGGATTGTGATTATGTGTCTTCGGAAGCTGCTGTTGCCGTAGTTAATCAATACCAAGATGATCCAGGAAGTCCACGCAAACAAGGAATTAgtcaaagaaagagaagaaaagtgtCAGATAATCTAAAATCCACCCCGGACACGGCTTTGAGGAGGAGTTCTCGCAGGACATCAGCTAGAAAACAGGTTTCAAGTGCAGTATCAGGGAAGGGGACTGATGATCCTTTGTCATCCTTGGAAACCAGTGTAACAGAAGAAAAACCTTCGATGCCTGGAAATGAGAAATATGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTACCCCCTTCttctcaaaatttgaatttagatGGCATTCCTgtcattgaatttttttctgtTTATGCTTGTTTAAGATCATTCAGTACCTTGTTATTTTTGAGTCCTTTTGAGTTGGAAGATCTTGTAGCTGCACTTAAGTCTGAAATCCCTAGTGTATTATTTGACAgcattcatgtttctattttgcAAATTCTGAGAAAGCATTTGGAATTCCTTTCCAGTGAGGGTTGCCAATCTGCATCCATTTGCCTGagGAATCTTAACTGGGATTTCTTGGACCTTGTAACATGGCCCATGTTCATGGCCGAGTACCTTCTGATTCACAGTTCACAGTTCAAAACTAGTTTTGATGGTAACCACTCAATGTTCAGAACTGATTACTACAAACAACCTGGCACTTTGAAGCTTGAGATTCTTCAGTACCTGTGCGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACAGAGTCTGGTATGGATTTTGATCAGAATATTTATTTCGACACTTGCAAGAAAAAAAGAGCTGTAACAGatctttctggtggatcttGCTTGACTGAGGAGATTGTGGATGACACAACTGACCTGAACAGTGATGAATGTTGCCTCTGCAAGATGGATGGAAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCTAGGTGTGTCGGGCTTGCAAGTGACAATCTTCCTGAAGGTGACTGGTATTGTCCCGAGTGTGCTATTGGCACACACCGGGCTTCGAGGAAATCACGAAGATCACTCCGAGGAGCAGACTTGTTGGGGACGGATCCTCACGGCTGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTTTCAAACTCATCAGATGCGGGATCCTTGTTCAATTACTACCATAGAAATGATATTCCCGTTGTAATTGAAGTTCTGAAGTCTATGGATACTTTATATGGAGACTTATTAATGGCTATCTCTAAGCATTGGGATATTCCGGTTGACTTAAATGCAGGGGCTAGTAATTTGGCAGTCTTTAATCAAAGCTCCTGCCAGAACATGCAAATGACAGCTGAATATTATGCTATGCCTACATCTGTAGCACCTtttacttcttcagaaatgtttATTGACAAGAATCTGGTTGATGATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACTGTTGTAGCCATGATGGCCAAGAGTTTCCAAAAGCTGGGAACCATTTAGACACAACAATAGAAAGTCCTTGTATTGCCTCAGAAGGATCAGCTGATACCACACAAATCATAGGTGTTAGCACTACCCCCTATACGGGCAATAAGGATTCATCACAAGCACCGTGTGGGACCGACTACATAAACTATTATAGCTTTGCCAGGGTGGCCTCATTAGTTGCACAGGAGTTGTTGATATGCAAGTCACATGAAAagatcaataaaaatattgtaatgaCTGAAGAAGAAATAATTTCAGACCAAACAAAGTCCATCTTGAAGAAGTCCACCAACTTTTGTTGGCCAAGTATTCAAAACCTGAACCCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCTTGTACATTTCTGTGGTGAAACCTCTTTATGAAGTGTCTAAAAGTACTTCTGCAGGGCTTCAACCCATGAATATCCAGAATGGACGTCTTAGAGAGATAATATGTCTTATTTTCTCTCTTGAGGTTCGATTGCGGGGTCTTTTATTGGGTCCATGGTTGAATCTGCATCAAACAGATATTTGGCATAATAATCTTTTGAAGTCATCTGATCTTCGTCCTGTTAAACGATTATTGCTTCTTTTGGAGTCCAATTTGAGTGACCGTGCACTTTCAGCTGATTGGTTAAAGCATGTGGATTCTGTAGTTACTATGGGATCTGCTTCCCATATTGTGGTCAGTTCATCACGCGCATCCTCAAGGCAGGGCATTGGAAAGAAAAGAGCCAGGCAATCAGATATTGAATCCAGTTCATCTTCAAAGACTACTGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCCCGAAAGTTGTTTAATTGGAAGGTCCTGCCTCGCTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTCTACAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCCAAGAGAAGCAGATGCGTTACCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTGGCTTTACAGGTTAGAGAACTCTATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATATGTATTGGACAAGGAATCTAAAAAATCAGTCAGGCTATTCAAAAAAGCAATTGTGCGCAGGAAGTGCACGGATGGACAATCTGCGAAATACCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCagatattattattaaacacGGTTCTTTGTTGGAGGAACCCTCAAGTGAGAGGAAAAAATATTGGCTGAACGAGTCTTATGTTCCTTTGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCATCCGCCAGTCCAATGataagaaaaatggaaaaattcTTGAGATTGATAGTGTAAAGAGGGATCCTCAACAAAGGGgtttttcatatttgttttcCCGAATGGAAAGATCTGATTGTCATCAGTGTGGGCATTGCAAAAAAGATGTACCAATAAGGGAAGCTGTGAGTTGCCTTTATTGCAAAGGATATTTCCACAAGAGGCATATCAGGAAATCTGGTGGCACAAGAGCTACGGAATGCACATATTCATGTCACAGATGCCAGGGTGGGTTGCATGCAAAGGCTAATACTAATAGAAAGAAAGTTGGCTCAAAACGGCAGAAGATTCAATCACAGAATTGTAAAAGTGCTCCTTTGGTTTGTAAATCAGTGAACCTTAAAGGCAATAAAAAGGCAGCAAGCAAGGTGCGGCAGGTGGTATCTCAAAACAATAAGAAGATCCCATCAATTGTACCTCTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTATTTGCGCACTCAAATAATTGGAGGACGTAAAAAAGGAACGCAAGGTAAAAAGAATGTAGGGCGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGACATCTCAAAAGCCCAAGGAAACTACTGGTCAACTTAAGAAGTTTCCCGTTGCTACATCACATAAGAAAAGAATGCAACCTTTTAACAGTTACTGGCTTAATGGTCTTCAGTTTTCTAGAAAGCCAAATGATGAACGAGTAATGctttttaaagagaaaaagcATATTATCTCAGATGTTCTTACTGGTTCCTTTGATTGTCGTAAATGCCGCCTTTGTTGTGGAGATGGATCCACATCAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCACTGTAGAGAATGCCGAACAACTTATTGGGTTTAGGTGCCATGTTTGTCGTGGTAGGGATGCTCCGATCTGTCCCCATGTGAAGATTAATGCATTGTCTCACACTGAACCCAATGCTGCAATTGAGCGTGCAGAGGAATGA 4221 0.3971 CEEVKEAQGCADGNEYSEVDGETRELREVESDVKRIYTEADGGCGNLSCASDAIKLEELHVSAGNVAEEGLIEGKEGHDGKENVVAIDSLRVSDGVSVMDCDYVSSEAAVAVVNQYQDDPGSPRKQGISQRKRRKVSDNLKSTPDTALRRSSRRTSARKQVSSAVSGKGTDDPLSSLETSVTEEKPSMPGNEKYEQCNVPIPKLQLPPSSQNLNLDGIPVIEFFSVYACLRSFSTLLFLSPFELEDLVAALKSEIPSVLFDSIHVSILQILRKHLEFLSSEGCQSASICLRNLNWDFLDLVTWPMFMAEYLLIHSSQFKTSFDGNHSMFRTDYYKQPGTLKLEILQYLCDDMIEADTIRSELNRRSLVTESGMDFDQNIYFDTCKKKRAVTDLSGGSCLTEEIVDDTTDLNSDECCLCKMDGNLICCDGCPAAFHSRCVGLASDNLPEGDWYCPECAIGTHRASRKSRRSLRGADLLGTDPHGCLYFDSCGYLLVSNSSDAGSLFNYYHRNDIPVVIEVLKSMDTLYGDLLMAISKHWDIPVDLNAGASNLAVFNQSSCQNMQMTAEYYAMPTSVAPFTSSEMFIDKNLVDDQKKLEKNSTIDCCSHDGQEFPKAGNHLDTTIESPCIASEGSADTTQIIGVSTTPYTGNKDSSQAPCGTDYINYYSFARVASLVAQELLICKSHEKINKNIVMTEEEIISDQTKSILKKSTNFCWPSIQNLNPAAQKEKCGWCFSCKVANDDRDCLYISVVKPLYEVSKSTSAGLQPMNIQNGRLREIICLIFSLEVRLRGLLLGPWLNLHQTDIWHNNLLKSSDLRPVKRLLLLLESNLSDRALSADWLKHVDSVVTMGSASHIVVSSSRASSRQGIGKKRARQSDIESSSSSKTTGGLGMYWWRGGRLSRKLFNWKVLPRSFVTKAARQAGSTKIPGILYPENSDFAKRSRCVTWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESKKSVRLFKKAIVRRKCTDGQSAKYLLDFGKRRAIPDIIIKHGSLLEEPSSERKKYWLNESYVPLHLLKNFEEKRIIRQSNDKKNGKILEIDSVKRDPQQRGFSYLFSRMERSDCHQCGHCKKDVPIREAVSCLYCKGYFHKRHIRKSGGTRATECTYSCHRCQGGLHAKANTNRKKVGSKRQKIQSQNCKSAPLVCKSVNLKGNKKAASKVRQVVSQNNKKIPSIVPLRRSTRKAKSLYLRTQIIGGRKKGTQGKKNVGRKKGKQSKSKKVTSQKPKETTGQLKKFPVATSHKKRMQPFNSYWLNGLQFSRKPNDERVMLFKEKKHIISDVLTGSFDCRKCRLCCGDGSTSNYIACEICGDWFHGDAFGLTVENAEQLIGFRCHVCRGRDAPICPHVKINALSHTEPNAAIERAEE 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 1234 1272 - -
Tsu02g02768 1406 ProSitePatterns Zinc finger PHD-type signature. 415 456 IPR019786 -
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 867 887 - -
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 157 186 - -
Tsu02g02768 1406 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 72 1392 - -
Tsu02g02768 1406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 474 IPR013083 -
Tsu02g02768 1406 SMART PHD_3 1327 1377 IPR001965 -
Tsu02g02768 1406 SMART PHD_3 414 457 IPR001965 -
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 115 192 - -
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 1243 1260 - -
Tsu02g02768 1406 ProSiteProfiles DDT domain profile. 217 277 IPR018501 -
Tsu02g02768 1406 CDD PHD1_AIRE 414 456 - -
Tsu02g02768 1406 SUPERFAMILY FYVE/PHD zinc finger 409 466 IPR011011 -
Tsu02g02768 1406 Pfam DDT domain 222 273 IPR018501 -
Tsu02g02768 1406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1324 1383 IPR013083 -
Tsu02g02768 1406 ProSiteProfiles Zinc finger PHD-type profile. 412 459 IPR019787 -
Tsu02g02768 1406 MobiDBLite consensus disorder prediction 1 26 - -
Tsu02g02768 1406 PANTHER PHD FINGER FAMILY PROTEIN 72 1392 - -
Tsu02g02768 1406 Pfam PHD-finger 415 457 IPR019787 -
Tsu02g02768 1406 SUPERFAMILY FYVE/PHD zinc finger 1327 1379 IPR011011 -
Tsu02g02768 1406 SMART testlast3 217 277 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02768 Tsu-Chr2 29699993 29712941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02768 56 1400 PHD Transcription Factor Family AT5G12400 43.130 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g02768 DDT 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02768 - - mtr:MTR_4g076180 2172.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02768 02 29699993 29712941 Tsu02g02768 02 29699993 29712941 ECH