Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02744 ATGAGGTTGAGTTGCAATGGGTGTCGCGTACTTCGCAAAGCTGTGTTCAAATCATTGTTGTATGAGGCTTCAGGTAGATTGGTGAATCCAACACATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAGCCGATGTGAAGCTGCAGTTCAAGCTGTGCTGGCTGGATCCATTATTAACGATGTTACAACTGCTGATGGACAAACATCATCATTCATTGCTGAAAACCATGTTCTTCCAACAACCTATGATATATGCCACGTGGCAAGAGGTACCAACGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGTTGGGTCAGCTTTCAAGCCTAAATCGCGAGTTGGTTTGGTTGATAGGGATACACTTATAAGATCGGGTTTAGAGAGTGGTAATGCAGAAATTGTGGAGGCTAATTCGTCAATGATTGAGATAAAGATGAATGGAACTGCTGAAACTCGAGTGAATTTGGAACTCATTCTTGGCTTCAATTTCCAATCAAAGAATgacaagaaaacaaataataattaa 531 0.4011 MRLSCNGCRVLRKAVFKSLLYEASGRLVNPTHGALGLFWTGQWSRCEAAVQAVLAGSIINDVTTADGQTSSFIAENHVLPTTYDICHVARGTNVDIKEKTQFKRVGSAFKPKSRVGLVDRDTLIRSGLESGNAEIVEANSSMIEIKMNGTAETRVNLELILGFNFQSKNDKKTNNN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02744 176 Pfam Lateral organ boundaries (LOB) domain 11 54 IPR004883 -
Tsu02g02744 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 13 174 - -
Tsu02g02744 176 PANTHER LOB DOMAIN PROTEIN 13 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02744 Tsu-Chr2 29124704 29125835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02744 11 127 AS2 family AT1G68510 39.316 5.90e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g02744 LOB 9.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02744 - - mtr:MTR_1g110840 195.282